Maize 282 association panel genotypes (7x, AGPv3 coordinates)

[New] The Panzea website uses CyVerse Data Store to distribute large data files. Please use iCommands (Linux) or Cyberduck (Windows and Mac) software to download files, not through CyVerse/iPlant web pages. You will need to login as a CyVerse (iPlant) user in order to see the data files. Anonymous data access is not allowed. If you do not have an account already, please register at CyVerse (iPlant) account. When using the software for downloading, you will need CyVerse data store file paths to locate the files. The files paths are provided below. Links to instructions of using iCommand and Cyberduck is at the bottom of this page. 

Genotypes of 282 association panel based on the whole genome sequencing data. This data set include the same markers as in HapMap V3.2.1, but called from higher coverage sequencing data than the HapMapV3.2.1 release. The VCF files can be downloaded from CyVerse in the directory: /iplant/home/shared/commons_repo/curated/Qi_Sun_Zea_mays_haplotype_map_2018/282_onHmp321. The file names are c*_282_corrected_onHmp321.vcf.gz. You can use this icommand to download all files: iget -K -r /iplant/home/shared/commons_repo/curated/Qi_Sun_Zea_mays_haplotype_map_2018/282_onHmp321. Users from China can use this link to download files: All raw data has been deposited to NCBI SRA PRJNA389800.

[Citation] Bukowski et al. (2018) Gigascience. 2017 Dec 30. doi: 10.1093/gigascience/gix134. [Epub ahead of print]

[CyVerse Data Store file path*]: /iplant/home/shared/commons_repo/curated/Qi_Sun_Zea_mays_haplotype_map_2018/282_onHmp321/
* Linux users can use iCommands to download the data files.  Click this link for instructions of using iCommands.
* Windows and Mac users can use Cyberduck to download the data files. Here is the instruction for Cyberduck.