ZeaGBSv2.7

 

This is the current ZeaGBS build, containing genotypes for 955,690 SNPs at more than 60K taxa (samples), 17,280 of which are public. For these public samples, both raw and partially imputed genotypes are available as HDF5 files with AGPv2 coordinates which can be opened with TASSEL 5. In addition, the variants and genotypes were uplifted to AGPv3 and AGPv4 coordinates in hapmap and Tassel HDF5 formats.

[Citation] Glaubitz et al. (2014) PLoS ONE 9:e90346

File NameDescriptionRef.ChrFormatRelease DateSize
ZeaGBSv27_publicSamples_imputedV5_AGPv4-181023.vcf.gzBgzipped VCF file (md5 c31ec4ed23935a6d33fa30b639f3309c).AGPv4  10/23/2018 
ZeaGBSv27_publicSamples_raw_AGPv4-181023.vcf.gzBgzipped VCF file (md5 67a6f2b8078db177b119e9b98b9e0ab7).AGPv4  10/23/2018 
AllZeaGBSv2.7_publicSamples_metadata20140411.xlsxMetadata on the 17,280 public samples  Excel201405010
RodgersMelnick2015PNAS_cnnamImputedXOsegments.txtCross over intervals in the Chinese NAM population identified in Rodgers-Melnick et al. 2015. Recombination in diverse maize is stable, predictable, and associated with genetic load. PNAS 112:3823–3828.AGPv2 txt201503110
RodgersMelnick2015PNAS_usnamImputedXOsegments.txtCross over intervals in the US NAM population identified in Rodgers-Melnick et al. 2015. Recombination in diverse maize is stable, predictable, and associated with genetic load. PNAS 112:3823–3828.AGPv2 txt201503110
RodgersMelnick2015PNAS_usnamRecombHotspots.txtRecombination hotspots in the US NAM population identified in Rodgers-Melnick et al. 2015. Recombination in diverse maize is stable, predictable, and associated with genetic load. PNAS 112:3823–3828.AGPv2 txt201503110