[New] The Panzea website uses CyVerse Data Store to distribute large data files. Please use iCommands (Linux) or Cyberduck (Windows and Mac) software to download files, not through CyVerse/iPlant web pages. You will need to login as a CyVerse (iPlant) user in order to see the data files. Anonymous data access is not allowed. If you do not have an account already, please register at CyVerse (iPlant) account. When using the software for downloading, you will need CyVerse data store file paths to locate the files. The files paths are provided below. Links to instructions of using iCommand and Cyberduck is at the bottom of this page. 

This somewhat older GBS build consists of 2,219,843 SNP genotypes for 32,736 public and private taxa. SNP filtering was less stringent compared to v2.7, so the additional SNPs are more "noisy". However, the public data are more highly curated, as they are split into germplasm sets of interest, including NAM, IBM, the Maize282 association panel, and a teosinte/W22 backcross family. Furthermore, cleaned up, phased, and fully imputed genotypes are available for NAM and the teosinte/W22 backcross family. The genome coordinates are AGPv2.


File NameDescriptionRef.ChrFormatRelease DateSize
NAM_BPEC_AllZea_GBS_Build_July_2012_FINAL.zipNAM (raw genotypes)AGPv2 zip/hapmap20121218 
NAM_imputed_AllZea_GBS_Build_July_2012_FINAL.zipNAM (partially imputed genotypes)AGPv2 zip/hapmap20121218 
NAM_phasedImputed_1cM_AllZeaGBSv2.3_allChrs.zipNAM (phased and fully imputed genotypes at 1 cM resolution)AGPv2 zip/hapmap20121218 
IBM_BPEC_AllZea_GBS_Build_July_2012_FINAL.zipIBM (raw genotypes)AGPv2 zip/hapmap20121218 
IBM_imputed_AllZea_GBS_Build_July_2012_FINAL.zipIBM (partially imputed genotypes)AGPv2 zip/hapmap20121218 
Maize282_BPEC_AllZea_GBS_Build_July_2012_FINAL.zipMaize282 (raw genotypes)AGPv2 zip/hapmap20121218 
Maize282_imputed_AllZea_GBS_Build_July_2012_FINAL.zipMaize282 (partially imputed genotypes)AGPv2 zip/hapmap20121218 
teoW22_BC2S3_GBS_phased_genos_imputed_20110423.zipTeosinte/W22 BC2S3 RILs (phased and imputed genotypes; current version 20110423)AGPv2 zip/hapmap20121218 

[CyVerse Data Store file path*]: /iplant/home/shared/panzea/genotypes/GBS/v23/
* Linux users can use iCommands to download the data files.  Click this link for instructions of using iCommands.
* Windows and Mac users can use Cyberduck to download the data files. Here is the instruction for Cyberduck.