c2pfam

AT2G36170.1 :

Domain Description Evalue Bits GA Start End
Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like 7E-20 60 23.70 1 71
Ubiquitin_4 Ubiquitin-like domain 0.0022 8 22.80 1 32
ubiquitin Ubiquitin family 2E-37 116 20.70 3 74
Rad60-SLD_2 Ubiquitin-2 like Rad60 SUMO-like 9E-06 15 23.00 10 72
Ubiquitin_2 Ubiquitin-like domain 1.3E-07 22 23.10 12 69
DUF2407 Putative membrane protein (DUF2407) 1.4E-05 15 26.10 13 63
Ubiquitin_5 Ubiquitin-like domain 1.1E-05 15 23.20 14 73
TBK1_ULD TANK binding kinase 1 ubiquitin-like domain 4.2E-06 16 31.00 17 51
Ubiquitin_4 Ubiquitin-like domain 0.0058 6 22.80 43 70
Ribosomal_L40e Ribosomal L40e family 6.9E-35 108 20.90 78 127
zf-C4pol C4-type zinc-finger of DNA polymerase delta 1.5E-05 15 28.90 84 115

128

Rad60-SLD
Ubiquitin_4
ubiquitin
Rad60-SLD_2
Ubiquitin_2
DUF2407
Ubiquitin_5
TBK1_ULD
Ubiquitin_4
Ribosomal_L40e
zf-C4pol

References:

Ubiquitin_4

DUF2407

Ubiquitin_5

ubiquitin
3041007 Structure of ubiquitin refined at 1.8 A resolution. J Mol Biol 1987;194:531-544.
8107144 Structure of tetraubiquitin shows how multiubiquitin chains can be formed. J Mol Biol 1994;236:601-609.
9654451 Structure determination of the small ubiquitin-related modifier SUMO-1. J Mol Biol 1998;280:275-286.
9857030 Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes. J Biol Chem 1998;273:34983-34991.
12826399 A potential proteasome-interacting motif within the ubiquitin-like domain of parkin and other proteins. Trends Biochem Sci 2003;28:280-283.

Ubiquitin_2

zf-C4pol

TBK1_ULD

Rad60-SLD_2

Rad60-SLD
15660128 Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1. EMBO J. 2005;24:439-451.
19363481 Molecular mimicry of SUMO promotes DNA repair. Nat Struct Mol Biol. 2009;16:509-516.

Ribosomal_L40e
3129699 RNA binding proteins of the large subunit of bovine mitochondrial ribosomes. Nucleic Acids Res 1988;16:2565-2583.
7488009 The carboxyl extensions of two rat ubiquitin fusion proteins are ribosomal proteins S27a and L40. Biochem Biophys Res Commun 1995;215:682-690.

Domain	Description	Evalue	Bits	GA	Start	End
Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	7E-20	60	23.70	1	71
Ubiquitin_4	Ubiquitin-like domain	0.0022	8	22.80	1	32
ubiquitin	Ubiquitin family	2E-37	116	20.70	3	74
Rad60-SLD_2	Ubiquitin-2 like Rad60 SUMO-like	9E-06	15	23.00	10	72
Ubiquitin_2	Ubiquitin-like domain	1.3E-07	22	23.10	12	69
DUF2407	Putative membrane protein (DUF2407)	1.4E-05	15	26.10	13	63
Ubiquitin_5	Ubiquitin-like domain	1.1E-05	15	23.20	14	73
TBK1_ULD	TANK binding kinase 1 ubiquitin-like domain	4.2E-06	16	31.00	17	51
Ubiquitin_4	Ubiquitin-like domain	0.0058	6	22.80	43	70
Ribosomal_L40e	Ribosomal L40e family	6.9E-35	108	20.90	78	127
zf-C4pol	C4-type zinc-finger of DNA polymerase delta	1.5E-05	15	28.90	84	115