c2pfam

AT2G36240.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 7.5E-06 16 25.00 161 185
PPR_long Pentacotripeptide-repeat region of PRORP 5.9E-10 28 27.00 161 312
PPR_1 PPR repeat 2.8E-05 13 23.80 163 184
PPR_2 PPR repeat family 0.00039 10 30.00 164 185
PPR_3 Pentatricopeptide repeat domain 0.32 1 25.00 164 185
PPR_3 Pentatricopeptide repeat domain 1.1E-11 34 25.00 190 238
PPR_1 PPR repeat 2.6E-09 26 23.80 190 219
PPR_2 PPR repeat family 2.7E-19 59 30.00 191 240
PPR PPR repeat 6E-10 28 25.00 195 221
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.072 1 25.90 199 254
TPR_7 Tetratricopeptide repeat 0.00054 10 27.90 203 218
PPR_1 PPR repeat 1.2E-15 46 23.80 225 255
PPR_2 PPR repeat family 1.7E-22 69 30.00 226 273
PPR PPR repeat 5.9E-14 41 25.00 230 259
PPR_3 Pentatricopeptide repeat domain 5.8E-11 32 25.00 234 271
TPR_7 Tetratricopeptide repeat 0.23 1 27.90 238 253
PPR_1 PPR repeat 4.6E-10 29 23.80 257 289
PPR_2 PPR repeat family 6.4E-15 45 30.00 261 310
PPR PPR repeat 6.2E-09 25 25.00 264 294
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0006 8 25.90 267 325
PPR_2 PPR repeat family 5E-07 19 30.00 300 344
PPR PPR repeat 4.3E-05 13 25.00 302 327
PPR_1 PPR repeat 2E-08 23 23.80 303 320
DegV Uncharacterised protein, DegV family COG1307 0.0071 5 20.30 305 355
PPR_long Pentacotripeptide-repeat region of PRORP 9.9E-05 11 27.00 326 411
PPR_1 PPR repeat 0.0002 11 23.80 329 358
PPR_3 Pentatricopeptide repeat domain 0.13 2 25.00 329 367
PPR PPR repeat 0.012 6 25.00 336 363
PPR_2 PPR repeat family 0.046 3 30.00 336 366
PPR_3 Pentatricopeptide repeat domain 2.8E-06 17 25.00 357 410
DegV Uncharacterised protein, DegV family COG1307 0.008 5 20.30 364 396
PPR_2 PPR repeat family 1.6E-11 34 30.00 367 415
PPR PPR repeat 7.6E-06 16 25.00 370 399
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.0015 7 25.90 372 422
PPR_1 PPR repeat 0.00038 10 23.80 372 394
TPR_7 Tetratricopeptide repeat 0.34 1 27.90 377 395
PPR_1 PPR repeat 7.6E-05 12 23.80 398 416
PPR PPR repeat 0.18 2 25.00 404 424
PPR_long Pentacotripeptide-repeat region of PRORP 0.0024 6 27.00 429 481
TES Trematode eggshell synthesis protein 4.5E-05 13 21.20 430 455
PPR_3 Pentatricopeptide repeat domain 2.1E-05 14 25.00 431 480
PPR_2 PPR repeat family 0.00057 10 30.00 431 449
PPR_1 PPR repeat 4.3E-08 22 23.80 432 464
PPR_2 PPR repeat family 5.2E-11 32 30.00 436 483
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.12 0 25.90 437 487
PPR PPR repeat 1.2E-05 15 25.00 440 468
PPR_1 PPR repeat 0.0003 10 23.80 468 483
PPR PPR repeat 0.0038 7 25.00 474 489

497

PPR
PPR_long
PPR_1
PPR_2
PPR_3
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
TPR_7
PPR_1
PPR_2
PPR
PPR_3
TPR_7
PPR_1
PPR_2
PPR
MRP-S27
PPR_2
PPR
PPR_1
DegV
PPR_long
PPR_1
PPR_3
PPR
PPR_2
PPR_3
DegV
PPR_2
PPR
MRP-S27
PPR_1
TPR_7
PPR_1
PPR
PPR_long
TES
PPR_3
PPR_2
PPR_1
PPR_2
MRP-S27
PPR
PPR_1
PPR

References:

TPR_7

TES

DegV
12577257 Crystal structure of a hypothetical protein, TM841 of Thermotoga maritima, reveals its function as a fatty acid-binding protein. Proteins 2003;50:526-530.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	7.5E-06	16	25.00	161	185
PPR_long	Pentacotripeptide-repeat region of PRORP	5.9E-10	28	27.00	161	312
PPR_1	PPR repeat	2.8E-05	13	23.80	163	184
PPR_2	PPR repeat family	0.00039	10	30.00	164	185
PPR_3	Pentatricopeptide repeat domain	0.32	1	25.00	164	185
PPR_3	Pentatricopeptide repeat domain	1.1E-11	34	25.00	190	238
PPR_1	PPR repeat	2.6E-09	26	23.80	190	219
PPR_2	PPR repeat family	2.7E-19	59	30.00	191	240
PPR	PPR repeat	6E-10	28	25.00	195	221
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.072	1	25.90	199	254
TPR_7	Tetratricopeptide repeat	0.00054	10	27.90	203	218
PPR_1	PPR repeat	1.2E-15	46	23.80	225	255
PPR_2	PPR repeat family	1.7E-22	69	30.00	226	273
PPR	PPR repeat	5.9E-14	41	25.00	230	259
PPR_3	Pentatricopeptide repeat domain	5.8E-11	32	25.00	234	271
TPR_7	Tetratricopeptide repeat	0.23	1	27.90	238	253
PPR_1	PPR repeat	4.6E-10	29	23.80	257	289
PPR_2	PPR repeat family	6.4E-15	45	30.00	261	310
PPR	PPR repeat	6.2E-09	25	25.00	264	294
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0006	8	25.90	267	325
PPR_2	PPR repeat family	5E-07	19	30.00	300	344
PPR	PPR repeat	4.3E-05	13	25.00	302	327
PPR_1	PPR repeat	2E-08	23	23.80	303	320
DegV	Uncharacterised protein, DegV family COG1307	0.0071	5	20.30	305	355
PPR_long	Pentacotripeptide-repeat region of PRORP	9.9E-05	11	27.00	326	411
PPR_1	PPR repeat	0.0002	11	23.80	329	358
PPR_3	Pentatricopeptide repeat domain	0.13	2	25.00	329	367
PPR	PPR repeat	0.012	6	25.00	336	363
PPR_2	PPR repeat family	0.046	3	30.00	336	366
PPR_3	Pentatricopeptide repeat domain	2.8E-06	17	25.00	357	410
DegV	Uncharacterised protein, DegV family COG1307	0.008	5	20.30	364	396
PPR_2	PPR repeat family	1.6E-11	34	30.00	367	415
PPR	PPR repeat	7.6E-06	16	25.00	370	399
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.0015	7	25.90	372	422
PPR_1	PPR repeat	0.00038	10	23.80	372	394
TPR_7	Tetratricopeptide repeat	0.34	1	27.90	377	395
PPR_1	PPR repeat	7.6E-05	12	23.80	398	416
PPR	PPR repeat	0.18	2	25.00	404	424
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0024	6	27.00	429	481
TES	Trematode eggshell synthesis protein	4.5E-05	13	21.20	430	455
PPR_3	Pentatricopeptide repeat domain	2.1E-05	14	25.00	431	480
PPR_2	PPR repeat family	0.00057	10	30.00	431	449
PPR_1	PPR repeat	4.3E-08	22	23.80	432	464
PPR_2	PPR repeat family	5.2E-11	32	30.00	436	483
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.12	0	25.90	437	487
PPR	PPR repeat	1.2E-05	15	25.00	440	468
PPR_1	PPR repeat	0.0003	10	23.80	468	483
PPR	PPR repeat	0.0038	7	25.00	474	489