c2pfam

AT2G36410.1 :

Domain Description Evalue Bits GA Start End
DUF4407 Domain of unknown function (DUF4407) 3E-06 18 31.30 43 182
Transcrip_act Transcriptional activator 0 230 27.50 45 194
TPR_MLP1_2 TPR/MLP1/MLP2-like protein 0.00065 11 30.00 51 158
Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 0.0055 7 33.20 51 178
Exonuc_VII_L Exonuclease VII, large subunit 0.003 8 21.70 52 162
PRKG1_interact cGMP-dependent protein kinase interacting domain 0.2 4 32.40 52 110
Mod_r Modifier of rudimentary (Mod(r)) protein 0.088 4 27.00 54 107
Nup54 Nucleoporin complex subunit 54 0.23 3 30.50 57 87
WXG100 Proteins of 100 residues with WXG 0.46 2 27.00 59 87
Mod_r Modifier of rudimentary (Mod(r)) protein 0.00029 12 27.00 60 173
ING Inhibitor of growth proteins N-terminal histone-binding 0.0036 9 23.90 62 139
Phasin Poly(hydroxyalcanoate) granule associated protein (phasin) 1.9E-05 16 41.00 63 133
ISG65-75 Invariant surface glycoprotein 0.0005 10 20.60 64 155
COG2 COG (conserved oligomeric Golgi) complex component, COG2 0.13 3 24.70 64 109
KxDL Uncharacterized conserved protein 0.0043 8 23.80 64 115
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.00022 12 38.00 65 139
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 0.0001 14 24.10 68 170
OmpH Outer membrane protein (OmpH-like) 0.17 3 28.70 68 107
DUF1664 Protein of unknown function (DUF1664) 5.4E-05 14 30.00 73 143
MIP-T3_C Microtubule-binding protein MIP-T3 C-terminal region 0.0019 9 25.80 74 177
Spc7 Spc7 kinetochore protein 0.00012 12 34.00 76 191
Laminin_II Laminin Domain II 0.59 1 27.70 77 106
DUF1690 Protein of Unknown function (DUF1690) 0.0013 10 28.00 80 161
Nup54 Nucleoporin complex subunit 54 0.019 6 30.50 81 179
Effector_1 Effector from type III secretion system 1.4E-05 15 23.80 83 174
TMPIT TMPIT-like protein 0.00023 12 22.10 84 172
XhlA Haemolysin XhlA 0.00011 14 29.10 86 133
WXG100 Proteins of 100 residues with WXG 0.011 7 27.00 86 121
Suppressor_APC Adenomatous polyposis coli tumour suppressor protein 6.8E-06 17 21.30 87 135
DUF4881 Domain of unknown function (DUF4881) 0.00012 13 146.10 92 191
DUF948 Bacterial protein of unknown function (DUF948) 0.013 7 28.10 92 140
OmpH Outer membrane protein (OmpH-like) 0.00032 12 28.70 92 171
Lectin_N Hepatic lectin, N-terminal domain 1.7E-05 16 25.80 98 149
HEPN_Toprim_N HEPN/Toprim N-terminal domain 1 7.9E-05 14 25.00 98 171
WXG100 Proteins of 100 residues with WXG 0.0081 8 27.00 105 177
Laminin_II Laminin Domain II 0.00024 12 27.70 105 188
COG2 COG (conserved oligomeric Golgi) complex component, COG2 0.0022 9 24.70 107 172
PRKG1_interact cGMP-dependent protein kinase interacting domain 0.0069 8 32.40 114 182
NPV_P10 Nucleopolyhedrovirus P10 protein 0.01 7 29.80 115 140
DUF948 Bacterial protein of unknown function (DUF948) 0.0022 9 28.10 116 169
XhlA Haemolysin XhlA 0.17 3 29.10 121 150
DUF1664 Protein of unknown function (DUF1664) 0.004 8 30.00 123 183
ING Inhibitor of growth proteins N-terminal histone-binding 0.043 6 23.90 145 170
KxDL Uncharacterized conserved protein 0.74 1 23.80 147 166

195

DUF4407
Transcrip_act
TPR_MLP1_2
Atg14
Exonuc_VII_L
PRKG1_interact
Mod_r
Nup54
WXG100
Mod_r
ING
Phasin
ISG65-75
COG2
KxDL
Baculo_PEP_C
Jnk-SapK_ap_N
OmpH
DUF1664
MIP-T3_C
Spc7
Laminin_II
DUF1690
Nup54
Effector_1
TMPIT
XhlA
WXG100
Suppressor_APC
DUF4881
DUF948
OmpH
Lectin_N
HEPN_Toprim_N
WXG100
Laminin_II
COG2
PRKG1_interact
NPV_P10
DUF948
XhlA
DUF1664
ING
KxDL

References:

Lectin_N
1785139 Recognition of complex oligosaccharides by the multi-subunit asialoglycoprotein receptor. Trends Biochem Sci 1991;16:374-377.

WXG100
11973144 The ESAT-6/WXG100 superfamily -- and a new Gram-positive secretion system?. Trends Microbiol 2002;10:209-212.

TPR_MLP1_2
9024684 Identification of protein p270/Tpr as a constitutive component of the nuclear pore complex-attached intranuclear filaments. J Cell Biol 1997;136:515-529.
7798308 Tpr, a large coiled coil protein whose amino terminus is involved in activation of oncogenic kinases, is localized to the cytoplasmic surface of the nuclear pore complex. J Cell Biol 1994;127:1515-1526.
10617624 Mlp2p, a component of nuclear pore attached intranuclear filaments, associates with nic96p. J Biol Chem 2000;275:343-350.
12490156 Myosin-like proteins 1 and 2 are not required for silencing or telomere anchoring, but act in the Tel1 pathway of telomere length control. J Struct Biol 2002;140:79-91.

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

NPV_P10
9634101 The single-nucleocapsid nucleopolyhedrovirus of Buzura suppressaria encodes a P10 protein. J Gen Virol 1998;79:1553-1562.

Laminin_II
3182802 Laminin, a multidomain protein. The A chain has a unique globular domain and homology with the basement membrane proteoglycan and the laminin B chains. J Biol Chem 1988;263:16536-16544.

MIP-T3_C

PRKG1_interact

DUF948

OmpH
2318304 Bacterial 'histone-like protein I' (HLP-I) is an outer membrane constituent? FEBS Lett 1990;262:123-126.
15304217 Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregation. Mol Cell 2004;15:367-374.

TMPIT

HEPN_Toprim_N

DUF1690

Atg14

DUF4407

Jnk-SapK_ap_N

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

DUF1664

KxDL

Mod_r
7651329 Modifier of rudimentary p1, mod(r)p1, a trans-acting regulatory mutation of rudimentary. Mol Gen Genet 1995;248:69-78.
15240819 The growth-regulatory protein HCRP1/hVps37A is a subunit of mammalian ESCRT-I and mediates receptor down-regulation. Mol Biol Cell 2004;15:4337-4346.

Phasin
12099824 Isolation and characterization of polyhydroxyalkanoates inclusions and their associated proteins in Pseudomonas sp. 61-3. Biomacromolecules 2002;3:787-792.

COG2
11980916 Characterization of a mammalian Golgi-localized protein complex, COG, that is required for normal Golgi morphology and function. J Cell Biol 2002;157:405-415.
17565980 Structural analysis of conserved oligomeric Golgi complex subunit 2. J Biol Chem. 2007;282:23418-23426.

ING

Transcrip_act

Suppressor_APC
12070164 The coiled coil region (amino acids 129-250) of the tumor suppressor protein adenomatous polyposis coli (APC). Its structure and its interaction with chromosome maintenance region 1 (Crm-1). J Biol Chem. 2002;277:32332-32338.

DUF4881

Baculo_PEP_C
8176372 Orgyia pseudotsugata baculovirus p10 and polyhedron envelope protein genes: analysis of their relative expression levels and role in polyhedron structure. J Gen Virol 1994;75:1115-1123.

XhlA
15659065 Expression and activity of a Xenorhabdus nematophila haemolysin required for full virulence towards Manduca sexta insects. Cell Microbiol. 2005;7:209-219.

ISG65-75
1587856 Molecular characterization of two invariant surface glycoproteins specific for the bloodstream stage of Trypanosoma brucei. J Biol Chem. 1992;267:10797-10803.
18538880 Heterologous expression, purification and characterisation of the extracellular domain of trypanosome invariant surface glycoprotein ISG75. J Biotechnol. 2008;135:247-254.

Effector_1

Nup54

Domain	Description	Evalue	Bits	GA	Start	End
DUF4407	Domain of unknown function (DUF4407)	3E-06	18	31.30	43	182
Transcrip_act	Transcriptional activator	0	230	27.50	45	194
TPR_MLP1_2	TPR/MLP1/MLP2-like protein	0.00065	11	30.00	51	158
Atg14	Vacuolar sorting 38 and autophagy-related subunit 14	0.0055	7	33.20	51	178
Exonuc_VII_L	Exonuclease VII, large subunit	0.003	8	21.70	52	162
PRKG1_interact	cGMP-dependent protein kinase interacting domain	0.2	4	32.40	52	110
Mod_r	Modifier of rudimentary (Mod(r)) protein	0.088	4	27.00	54	107
Nup54	Nucleoporin complex subunit 54	0.23	3	30.50	57	87
WXG100	Proteins of 100 residues with WXG	0.46	2	27.00	59	87
Mod_r	Modifier of rudimentary (Mod(r)) protein	0.00029	12	27.00	60	173
ING	Inhibitor of growth proteins N-terminal histone-binding	0.0036	9	23.90	62	139
Phasin	Poly(hydroxyalcanoate) granule associated protein (phasin)	1.9E-05	16	41.00	63	133
ISG65-75	Invariant surface glycoprotein	0.0005	10	20.60	64	155
COG2	COG (conserved oligomeric Golgi) complex component, COG2	0.13	3	24.70	64	109
KxDL	Uncharacterized conserved protein	0.0043	8	23.80	64	115
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.00022	12	38.00	65	139
Jnk-SapK_ap_N	JNK_SAPK-associated protein-1	0.0001	14	24.10	68	170
OmpH	Outer membrane protein (OmpH-like)	0.17	3	28.70	68	107
DUF1664	Protein of unknown function (DUF1664)	5.4E-05	14	30.00	73	143
MIP-T3_C	Microtubule-binding protein MIP-T3 C-terminal region	0.0019	9	25.80	74	177
Spc7	Spc7 kinetochore protein	0.00012	12	34.00	76	191
Laminin_II	Laminin Domain II	0.59	1	27.70	77	106
DUF1690	Protein of Unknown function (DUF1690)	0.0013	10	28.00	80	161
Nup54	Nucleoporin complex subunit 54	0.019	6	30.50	81	179
Effector_1	Effector from type III secretion system	1.4E-05	15	23.80	83	174
TMPIT	TMPIT-like protein	0.00023	12	22.10	84	172
XhlA	Haemolysin XhlA	0.00011	14	29.10	86	133
WXG100	Proteins of 100 residues with WXG	0.011	7	27.00	86	121
Suppressor_APC	Adenomatous polyposis coli tumour suppressor protein	6.8E-06	17	21.30	87	135
DUF4881	Domain of unknown function (DUF4881)	0.00012	13	146.10	92	191
DUF948	Bacterial protein of unknown function (DUF948)	0.013	7	28.10	92	140
OmpH	Outer membrane protein (OmpH-like)	0.00032	12	28.70	92	171
Lectin_N	Hepatic lectin, N-terminal domain	1.7E-05	16	25.80	98	149
HEPN_Toprim_N	HEPN/Toprim N-terminal domain 1	7.9E-05	14	25.00	98	171
WXG100	Proteins of 100 residues with WXG	0.0081	8	27.00	105	177
Laminin_II	Laminin Domain II	0.00024	12	27.70	105	188
COG2	COG (conserved oligomeric Golgi) complex component, COG2	0.0022	9	24.70	107	172
PRKG1_interact	cGMP-dependent protein kinase interacting domain	0.0069	8	32.40	114	182
NPV_P10	Nucleopolyhedrovirus P10 protein	0.01	7	29.80	115	140
DUF948	Bacterial protein of unknown function (DUF948)	0.0022	9	28.10	116	169
XhlA	Haemolysin XhlA	0.17	3	29.10	121	150
DUF1664	Protein of unknown function (DUF1664)	0.004	8	30.00	123	183
ING	Inhibitor of growth proteins N-terminal histone-binding	0.043	6	23.90	145	170
KxDL	Uncharacterized conserved protein	0.74	1	23.80	147	166