c2pfam

AT2G36910.1 :

Domain Description Evalue Bits GA Start End
ABC_membrane ABC transporter transmembrane region 0 188 22.00 46 317
ABC_tran ABC transporter 1.2E-37 121 23.10 386 535
AAA_16 AAA ATPase domain 2E-06 20 32.60 392 551
DUF815 Protein of unknown function (DUF815) 0.015 6 20.10 393 421
AAA_25 AAA domain 0.002 9 27.00 393 413
AAA_7 P-loop containing dynein motor region 0.018 6 25.80 393 416
RsgA_GTPase RsgA GTPase 0.00046 11 30.00 395 417
AAA_29 P-loop containing region of AAA domain 8.2E-05 14 27.00 395 413
AAA_15 AAA ATPase domain 0.00099 10 32.10 396 423
APS_kinase Adenylylsulphate kinase 0.00052 11 20.70 396 436
AAA_24 AAA domain 0.0061 7 27.00 396 416
Mg_chelatase Magnesium chelatase, subunit ChlI 0.059 4 20.30 396 430
Zeta_toxin Zeta toxin 9E-06 16 20.10 397 437
AAA_22 AAA domain 5.1E-05 15 27.00 398 551
AAA_30 AAA domain 0.00079 10 27.00 398 548
G-alpha G-protein alpha subunit 0.00033 11 20.10 398 423
AAA_23 AAA domain 0.089 4 27.00 398 415
P-loop_TraG TraG P-loop domain 0.022 4 25.80 398 430
Dynamin_N Dynamin family 0.062 5 21.00 399 413
AAA_28 AAA domain 0.048 5 27.00 399 417
Gtr1_RagA Gtr1/RagA G protein conserved region 0.035 5 20.10 399 440
MMR_HSR1 GTPase of unknown function 0.039 5 24.50 399 414
RNA_helicase RNA helicase 0.084 5 21.50 399 415
PRK Phosphoribulokinase / Uridine kinase family 0.0023 9 20.60 399 419
Rad17 Rad17 cell cycle checkpoint protein 0.37 2 19.70 399 418
AAA_18 AAA domain 0.0079 8 29.40 399 418
DUF87 Domain of unknown function DUF87 5.2E-05 15 20.90 399 430
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.01 7 27.00 400 421
AAA_5 AAA domain (dynein-related subfamily) 0.0064 8 20.80 400 424
AAA_33 AAA domain 0.0065 8 27.00 400 414
SMC_N RecF/RecN/SMC N terminal domain 1.6E-07 22 40.00 411 575
ABC_ATPase Predicted ATPase of the ABC class 0.00031 11 19.30 469 537
AAA ATPase family associated with various cellular activities (AAA) 0.0096 8 20.80 483 558
SbcCD_C Putative exonuclease SbcCD, C subunit 0.0016 10 27.00 494 549
ABC_membrane ABC transporter transmembrane region 0 179 22.00 705 971
DUF815 Protein of unknown function (DUF815) 0.4 1 20.10 760 807
ABC_tran ABC transporter 7.8E-37 118 23.10 1043 1191
AAA_16 AAA ATPase domain 2.7E-06 19 32.60 1045 1092
Rad17 Rad17 cell cycle checkpoint protein 0.00024 12 19.70 1046 1074
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0087 7 20.30 1046 1090
AAA_29 P-loop containing region of AAA domain 0.0009 10 27.00 1048 1069
AAA_7 P-loop containing dynein motor region 0.0066 7 25.80 1049 1071
AAA_25 AAA domain 0.026 5 27.00 1050 1069
RsgA_GTPase RsgA GTPase 0.00018 13 30.00 1051 1073
DUF815 Protein of unknown function (DUF815) 0.0018 9 20.10 1052 1107
APS_kinase Adenylylsulphate kinase 0.017 6 20.70 1052 1092
AAA_24 AAA domain 0.028 5 27.00 1053 1073
AAA_22 AAA domain 0.001 11 27.00 1053 1077
Zeta_toxin Zeta toxin 7.7E-05 13 20.10 1053 1094
AAA_15 AAA ATPase domain 0.00017 12 32.10 1053 1093
AAA_30 AAA domain 0.0012 10 27.00 1053 1085
G-alpha G-protein alpha subunit 0.00075 10 20.10 1054 1104
DUF87 Domain of unknown function DUF87 0.11 4 20.90 1054 1086
SMC_N RecF/RecN/SMC N terminal domain 0.012 6 40.00 1054 1072
AAA_23 AAA domain 0.027 6 27.00 1054 1072
MMR_HSR1 GTPase of unknown function 0.052 5 24.50 1055 1072
Dynamin_N Dynamin family 0.25 3 21.00 1055 1071
P-loop_TraG TraG P-loop domain 0.032 4 25.80 1055 1086
Gtr1_RagA Gtr1/RagA G protein conserved region 0.014 6 20.10 1056 1096
AAA_28 AAA domain 0.13 4 27.00 1056 1074
PRK Phosphoribulokinase / Uridine kinase family 0.0088 7 20.60 1056 1077
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0018 9 27.00 1056 1076
AAA ATPase family associated with various cellular activities (AAA) 0.00023 13 20.80 1056 1214
AAA_5 AAA domain (dynein-related subfamily) 0.00093 10 20.80 1056 1096
AAA_18 AAA domain 0.038 6 29.40 1057 1074
AAA_33 AAA domain 0.12 4 27.00 1057 1069
RNA_helicase RNA helicase 0.016 7 21.50 1057 1072
SMC_N RecF/RecN/SMC N terminal domain 5.1E-09 27 40.00 1074 1231
ABC_ATPase Predicted ATPase of the ABC class 6E-05 13 19.30 1141 1192
SbcCD_C Putative exonuclease SbcCD, C subunit 0.0018 10 27.00 1178 1206

1286

ABC_membrane
ABC_tran
AAA_16
DUF815
AAA_25
AAA_7
RsgA_GTPase
AAA_29
AAA_15
APS_kinase
AAA_24
Mg_chelatase
Zeta_toxin
AAA_22
AAA_30
G-alpha
AAA_23
P-loop_TraG
Dynamin_N
AAA_28
Gtr1_RagA
MMR_HSR1
RNA_helicase
PRK
Rad17
AAA_18
DUF87
AAA_21
AAA_5
AAA_33
SMC_N
ABC_ATPase
AAA
SbcCD_C
ABC_membrane
DUF815
ABC_tran
AAA_16
Rad17
Mg_chelatase
AAA_29
AAA_7
AAA_25
RsgA_GTPase
DUF815
APS_kinase
AAA_24
AAA_22
Zeta_toxin
AAA_15
AAA_30
G-alpha
DUF87
SMC_N
AAA_23
MMR_HSR1
Dynamin_N
P-loop_TraG
Gtr1_RagA
AAA_28
PRK
AAA_21
AAA
AAA_5
AAA_18
AAA_33
RNA_helicase
SMC_N
ABC_ATPase
SbcCD_C

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

RsgA_GTPase

SbcCD_C

P-loop_TraG

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

PRK
9548738 The crystal structure of phosphoribulokinase from Rhodobacter sphaeroides reveals a fold similar to that of adenylate kinase. Biochemistry 1998;37:5074-5085.
17143579 Functional characterization of a gene encoding a dual domain for uridine kinase and uracil phosphoribosyltransferase in Arabidopsis thaliana. Plant Mol Biol. 2007;63:465-477.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

G-alpha
8073283 Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis. Science 1994;265:1405-1412.
8851656 How G proteins work: a continuing story. Trends Biochem Sci 1996;21:41-44.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

DUF815

AAA_7

AAA_16

AAA_33

AAA_30

AAA_29

AAA_28

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

AAA_18

Gtr1_RagA
1620108 Putative GTP-binding protein, Gtr1, associated with the function of the Pho84 inorganic phosphate transporter in Saccharomyces cerevisiae. Mol Cell Biol 1992;12:2958-2966.
7499430 Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases. J Biol Chem 1995;270:28982-28988.
10388807 Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 1999;152:853-867.
11073942 Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J Biol Chem 2001;276:7246-7257.

AAA_15

APS_kinase
9786849 Adenosine 5'-phosphosulfate kinase from Penicillium chrysogenum. site- directed mutagenesis at putative phosphoryl-accepting and ATP P-loop residues. J Biol Chem 1998;273:28583-28589.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

ABC_membrane

ABC_ATPase

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

DUF87

Domain	Description	Evalue	Bits	GA	Start	End
ABC_membrane	ABC transporter transmembrane region	0	188	22.00	46	317
ABC_tran	ABC transporter	1.2E-37	121	23.10	386	535
AAA_16	AAA ATPase domain	2E-06	20	32.60	392	551
DUF815	Protein of unknown function (DUF815)	0.015	6	20.10	393	421
AAA_25	AAA domain	0.002	9	27.00	393	413
AAA_7	P-loop containing dynein motor region	0.018	6	25.80	393	416
RsgA_GTPase	RsgA GTPase	0.00046	11	30.00	395	417
AAA_29	P-loop containing region of AAA domain	8.2E-05	14	27.00	395	413
AAA_15	AAA ATPase domain	0.00099	10	32.10	396	423
APS_kinase	Adenylylsulphate kinase	0.00052	11	20.70	396	436
AAA_24	AAA domain	0.0061	7	27.00	396	416
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.059	4	20.30	396	430
Zeta_toxin	Zeta toxin	9E-06	16	20.10	397	437
AAA_22	AAA domain	5.1E-05	15	27.00	398	551
AAA_30	AAA domain	0.00079	10	27.00	398	548
G-alpha	G-protein alpha subunit	0.00033	11	20.10	398	423
AAA_23	AAA domain	0.089	4	27.00	398	415
P-loop_TraG	TraG P-loop domain	0.022	4	25.80	398	430
Dynamin_N	Dynamin family	0.062	5	21.00	399	413
AAA_28	AAA domain	0.048	5	27.00	399	417
Gtr1_RagA	Gtr1/RagA G protein conserved region	0.035	5	20.10	399	440
MMR_HSR1	GTPase of unknown function	0.039	5	24.50	399	414
RNA_helicase	RNA helicase	0.084	5	21.50	399	415
PRK	Phosphoribulokinase / Uridine kinase family	0.0023	9	20.60	399	419
Rad17	Rad17 cell cycle checkpoint protein	0.37	2	19.70	399	418
AAA_18	AAA domain	0.0079	8	29.40	399	418
DUF87	Domain of unknown function DUF87	5.2E-05	15	20.90	399	430
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.01	7	27.00	400	421
AAA_5	AAA domain (dynein-related subfamily)	0.0064	8	20.80	400	424
AAA_33	AAA domain	0.0065	8	27.00	400	414
SMC_N	RecF/RecN/SMC N terminal domain	1.6E-07	22	40.00	411	575
ABC_ATPase	Predicted ATPase of the ABC class	0.00031	11	19.30	469	537
AAA	ATPase family associated with various cellular activities (AAA)	0.0096	8	20.80	483	558
SbcCD_C	Putative exonuclease SbcCD, C subunit	0.0016	10	27.00	494	549
ABC_membrane	ABC transporter transmembrane region	0	179	22.00	705	971
DUF815	Protein of unknown function (DUF815)	0.4	1	20.10	760	807
ABC_tran	ABC transporter	7.8E-37	118	23.10	1043	1191
AAA_16	AAA ATPase domain	2.7E-06	19	32.60	1045	1092
Rad17	Rad17 cell cycle checkpoint protein	0.00024	12	19.70	1046	1074
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0087	7	20.30	1046	1090
AAA_29	P-loop containing region of AAA domain	0.0009	10	27.00	1048	1069
AAA_7	P-loop containing dynein motor region	0.0066	7	25.80	1049	1071
AAA_25	AAA domain	0.026	5	27.00	1050	1069
RsgA_GTPase	RsgA GTPase	0.00018	13	30.00	1051	1073
DUF815	Protein of unknown function (DUF815)	0.0018	9	20.10	1052	1107
APS_kinase	Adenylylsulphate kinase	0.017	6	20.70	1052	1092
AAA_24	AAA domain	0.028	5	27.00	1053	1073
AAA_22	AAA domain	0.001	11	27.00	1053	1077
Zeta_toxin	Zeta toxin	7.7E-05	13	20.10	1053	1094
AAA_15	AAA ATPase domain	0.00017	12	32.10	1053	1093
AAA_30	AAA domain	0.0012	10	27.00	1053	1085
G-alpha	G-protein alpha subunit	0.00075	10	20.10	1054	1104
DUF87	Domain of unknown function DUF87	0.11	4	20.90	1054	1086
SMC_N	RecF/RecN/SMC N terminal domain	0.012	6	40.00	1054	1072
AAA_23	AAA domain	0.027	6	27.00	1054	1072
MMR_HSR1	GTPase of unknown function	0.052	5	24.50	1055	1072
Dynamin_N	Dynamin family	0.25	3	21.00	1055	1071
P-loop_TraG	TraG P-loop domain	0.032	4	25.80	1055	1086
Gtr1_RagA	Gtr1/RagA G protein conserved region	0.014	6	20.10	1056	1096
AAA_28	AAA domain	0.13	4	27.00	1056	1074
PRK	Phosphoribulokinase / Uridine kinase family	0.0088	7	20.60	1056	1077
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0018	9	27.00	1056	1076
AAA	ATPase family associated with various cellular activities (AAA)	0.00023	13	20.80	1056	1214
AAA_5	AAA domain (dynein-related subfamily)	0.00093	10	20.80	1056	1096
AAA_18	AAA domain	0.038	6	29.40	1057	1074
AAA_33	AAA domain	0.12	4	27.00	1057	1069
RNA_helicase	RNA helicase	0.016	7	21.50	1057	1072
SMC_N	RecF/RecN/SMC N terminal domain	5.1E-09	27	40.00	1074	1231
ABC_ATPase	Predicted ATPase of the ABC class	6E-05	13	19.30	1141	1192
SbcCD_C	Putative exonuclease SbcCD, C subunit	0.0018	10	27.00	1178	1206