c2pfam

AT2G37280.1 :

Domain Description Evalue Bits GA Start End
TRCF TRCF domain 0.00017 14 25.00 28 86
ABC_trans_N ABC-transporter N-terminal 1.4E-08 27 25.40 81 130
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.0043 9 26.60 153 189
ABC_tran ABC transporter 1.6E-20 66 23.10 155 339
ABC_ATPase Predicted ATPase of the ABC class 0.0023 8 19.30 156 188
RsgA_GTPase RsgA GTPase 0.00026 13 30.00 158 193
AAA_25 AAA domain 4.6E-05 15 27.00 158 185
AAA_7 P-loop containing dynein motor region 0.0021 9 25.80 161 192
AAA_30 AAA domain 0.0002 13 27.00 163 190
AAA_19 AAA domain 0.0009 11 25.10 164 191
AAA_16 AAA ATPase domain 8.2E-06 18 32.60 164 192
Rad17 Rad17 cell cycle checkpoint protein 8.3E-06 17 19.70 165 193
AAA_29 P-loop containing region of AAA domain 0.00034 12 27.00 165 186
AAA_22 AAA domain 0.00011 14 27.00 165 191
AAA_15 AAA ATPase domain 0.0035 9 32.10 165 186
AAA_14 AAA domain 0.0059 8 27.00 166 190
NACHT NACHT domain 0.00024 13 20.40 166 189
AAA_23 AAA domain 0.00011 14 27.00 166 186
SMC_N RecF/RecN/SMC N terminal domain 0.013 7 40.00 167 355
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0015 10 27.00 167 186
AAA_33 AAA domain 0.00099 11 27.00 167 189
Zeta_toxin Zeta toxin 0.0072 7 20.10 167 191
SRP54 SRP54-type protein, GTPase domain 0.097 4 20.50 168 191
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.00095 11 20.50 168 188
cobW CobW/HypB/UreG, nucleotide-binding domain 0.002 9 20.70 168 188
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.00042 12 20.00 168 195
AAA_5 AAA domain (dynein-related subfamily) 0.00014 14 20.80 169 192
RNA_helicase RNA helicase 0.00043 12 21.50 169 197
AAA_24 AAA domain 0.0066 8 27.00 169 185
AAA ATPase family associated with various cellular activities (AAA) 2E-06 20 20.80 169 192
AAA_18 AAA domain 1.2E-05 18 29.40 169 207
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0018 9 20.30 169 188
FeoB_N Ferrous iron transport protein B 0.01 7 21.20 169 188
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.0032 9 20.90 170 186
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.015 7 21.60 170 215
NB-ARC NB-ARC domain 0.024 5 23.50 170 187
NTPase_1 NTPase 0.0016 10 23.90 170 197
MMR_HSR1 GTPase of unknown function 0.007 8 24.50 170 188
AAA_28 AAA domain 3.5E-05 16 27.00 170 199
AAA_17 AAA domain 0.0013 11 27.00 171 190
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.49 2 27.00 330 367
ABC2_membrane_7 ABC-2 type transporter 2.5E-09 28 22.70 370 443
ABC2_membrane ABC-2 type transporter 0 127 25.50 491 702
ABC2_membrane_3 ABC-2 family transporter protein 4.2E-07 21 31.60 602 752
PDR_assoc Plant PDR ABC transporter associated 1.1E-22 71 22.70 707 769
PDR_CDR CDR ABC transporter 0.45 2 20.50 727 765
RsgA_GTPase RsgA GTPase 9.4E-05 14 30.00 839 875
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.025 6 26.60 840 872
ABC_tran ABC transporter 6.9E-21 67 23.10 842 992
SMC_N RecF/RecN/SMC N terminal domain 0.38 2 40.00 844 871
AAA_25 AAA domain 0.0014 10 27.00 846 872
AAA_16 AAA ATPase domain 0.0048 9 32.60 850 906
AAA_30 AAA domain 0.01 7 27.00 851 872
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00059 11 27.00 853 929
AAA_29 P-loop containing region of AAA domain 0.00025 12 27.00 853 871
AAA_23 AAA domain 0.012 8 27.00 853 871
NB-ARC NB-ARC domain 0.25 2 23.50 853 869
Zeta_toxin Zeta toxin 0.15 3 20.10 853 874
FeoB_N Ferrous iron transport protein B 0.33 2 21.20 854 875
SRP54 SRP54-type protein, GTPase domain 0.059 5 20.50 854 872
AAA_22 AAA domain 0.016 7 27.00 854 875
AAA_33 AAA domain 0.0089 8 27.00 854 876
NACHT NACHT domain 0.028 6 20.40 854 883
cobW CobW/HypB/UreG, nucleotide-binding domain 0.0082 7 20.70 854 875
MMR_HSR1 GTPase of unknown function 0.033 6 24.50 855 875
AAA_28 AAA domain 0.033 6 27.00 855 877
AAA_14 AAA domain 0.32 3 27.00 855 874
AAA_24 AAA domain 0.14 3 27.00 855 869
Rad17 Rad17 cell cycle checkpoint protein 0.36 2 19.70 855 881
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.041 5 21.60 855 871
AAA_18 AAA domain 0.0063 9 29.40 856 875
AAA ATPase family associated with various cellular activities (AAA) 0.043 6 20.80 856 910
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.056 5 20.50 856 875
AAA_17 AAA domain 0.15 4 27.00 857 872
SMC_N RecF/RecN/SMC N terminal domain 0.0057 8 40.00 973 1029
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 7.4E-05 14 27.00 982 1026
AAA_15 AAA ATPase domain 0.2 3 32.10 982 1024
NTPase_1 NTPase 0.51 2 23.90 999 1030
ABC2_membrane_7 ABC-2 type transporter 2.1E-10 32 22.70 1022 1096
ABC2_membrane ABC-2 type transporter 0 182 25.50 1138 1352
ABC2_membrane_7 ABC-2 type transporter 0.1 3 22.70 1185 1305
ABC2_membrane_3 ABC-2 family transporter protein 0.0024 9 31.60 1192 1397
DUF2953 Protein of unknown function (DUF2953) 0.00083 11 21.70 1272 1302
PDR_CDR CDR ABC transporter 0.0024 9 20.50 1370 1411

1413

TRCF
ABC_trans_N
TsaE
ABC_tran
ABC_ATPase
RsgA_GTPase
AAA_25
AAA_7
AAA_30
AAA_19
AAA_16
Rad17
AAA_29
AAA_22
AAA_15
AAA_14
NACHT
AAA_23
SMC_N
AAA_21
AAA_33
Zeta_toxin
SRP54
PduV-EutP
cobW
RuvB_N
AAA_5
RNA_helicase
AAA_24
AAA
AAA_18
Mg_chelatase
FeoB_N
Viral_helicase1
MobB
NB-ARC
NTPase_1
MMR_HSR1
AAA_28
AAA_17
AAA_21
ABC2_membrane_7
ABC2_membrane
ABC2_membrane_3
PDR_assoc
PDR_CDR
RsgA_GTPase
TsaE
ABC_tran
SMC_N
AAA_25
AAA_16
AAA_30
AAA_21
AAA_29
AAA_23
NB-ARC
Zeta_toxin
FeoB_N
SRP54
AAA_22
AAA_33
NACHT
cobW
MMR_HSR1
AAA_28
AAA_14
AAA_24
Rad17
MobB
AAA_18
AAA
PduV-EutP
AAA_17
SMC_N
AAA_21
AAA_15
NTPase_1
ABC2_membrane_7
ABC2_membrane
ABC2_membrane_7
ABC2_membrane_3
DUF2953
PDR_CDR

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

ABC_trans_N

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

ABC2_membrane_7

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

TsaE

PDR_CDR
12709320 Functional Similarities and Differences between Candida albicans Cdr1p and Cdr2p Transporters. Antimicrob Agents Chemother 2003;47:1543-1554.

PDR_assoc
12430018 The plant PDR family of ABC transporters. Planta 2002;216:95-106.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

ABC2_membrane_3

NTPase_1

FeoB_N
8407793 Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 1993;175:6212-6219.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

Viral_helicase1
8269709 Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993;28:375-430.
10217401 RNA helicase activity of Semliki Forest virus replicase protein NSP2. FEBS Lett 1999;448:19-22.
8057461 ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J Virol 1994;68:5804-5810.
10982322 Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J Virol 2000;74:8803-8811.

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_30

AAA_29

AAA_28

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

AAA_19

AAA_18

AAA_17

AAA_16

AAA_15

AAA_14

MobB

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

DUF2953

ABC_ATPase

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

TRCF

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

RsgA_GTPase

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

Domain	Description	Evalue	Bits	GA	Start	End
TRCF	TRCF domain	0.00017	14	25.00	28	86
ABC_trans_N	ABC-transporter N-terminal	1.4E-08	27	25.40	81	130
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.0043	9	26.60	153	189
ABC_tran	ABC transporter	1.6E-20	66	23.10	155	339
ABC_ATPase	Predicted ATPase of the ABC class	0.0023	8	19.30	156	188
RsgA_GTPase	RsgA GTPase	0.00026	13	30.00	158	193
AAA_25	AAA domain	4.6E-05	15	27.00	158	185
AAA_7	P-loop containing dynein motor region	0.0021	9	25.80	161	192
AAA_30	AAA domain	0.0002	13	27.00	163	190
AAA_19	AAA domain	0.0009	11	25.10	164	191
AAA_16	AAA ATPase domain	8.2E-06	18	32.60	164	192
Rad17	Rad17 cell cycle checkpoint protein	8.3E-06	17	19.70	165	193
AAA_29	P-loop containing region of AAA domain	0.00034	12	27.00	165	186
AAA_22	AAA domain	0.00011	14	27.00	165	191
AAA_15	AAA ATPase domain	0.0035	9	32.10	165	186
AAA_14	AAA domain	0.0059	8	27.00	166	190
NACHT	NACHT domain	0.00024	13	20.40	166	189
AAA_23	AAA domain	0.00011	14	27.00	166	186
SMC_N	RecF/RecN/SMC N terminal domain	0.013	7	40.00	167	355
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0015	10	27.00	167	186
AAA_33	AAA domain	0.00099	11	27.00	167	189
Zeta_toxin	Zeta toxin	0.0072	7	20.10	167	191
SRP54	SRP54-type protein, GTPase domain	0.097	4	20.50	168	191
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.00095	11	20.50	168	188
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.002	9	20.70	168	188
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.00042	12	20.00	168	195
AAA_5	AAA domain (dynein-related subfamily)	0.00014	14	20.80	169	192
RNA_helicase	RNA helicase	0.00043	12	21.50	169	197
AAA_24	AAA domain	0.0066	8	27.00	169	185
AAA	ATPase family associated with various cellular activities (AAA)	2E-06	20	20.80	169	192
AAA_18	AAA domain	1.2E-05	18	29.40	169	207
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0018	9	20.30	169	188
FeoB_N	Ferrous iron transport protein B	0.01	7	21.20	169	188
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.0032	9	20.90	170	186
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.015	7	21.60	170	215
NB-ARC	NB-ARC domain	0.024	5	23.50	170	187
NTPase_1	NTPase	0.0016	10	23.90	170	197
MMR_HSR1	GTPase of unknown function	0.007	8	24.50	170	188
AAA_28	AAA domain	3.5E-05	16	27.00	170	199
AAA_17	AAA domain	0.0013	11	27.00	171	190
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.49	2	27.00	330	367
ABC2_membrane_7	ABC-2 type transporter	2.5E-09	28	22.70	370	443
ABC2_membrane	ABC-2 type transporter	0	127	25.50	491	702
ABC2_membrane_3	ABC-2 family transporter protein	4.2E-07	21	31.60	602	752
PDR_assoc	Plant PDR ABC transporter associated	1.1E-22	71	22.70	707	769
PDR_CDR	CDR ABC transporter	0.45	2	20.50	727	765
RsgA_GTPase	RsgA GTPase	9.4E-05	14	30.00	839	875
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.025	6	26.60	840	872
ABC_tran	ABC transporter	6.9E-21	67	23.10	842	992
SMC_N	RecF/RecN/SMC N terminal domain	0.38	2	40.00	844	871
AAA_25	AAA domain	0.0014	10	27.00	846	872
AAA_16	AAA ATPase domain	0.0048	9	32.60	850	906
AAA_30	AAA domain	0.01	7	27.00	851	872
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00059	11	27.00	853	929
AAA_29	P-loop containing region of AAA domain	0.00025	12	27.00	853	871
AAA_23	AAA domain	0.012	8	27.00	853	871
NB-ARC	NB-ARC domain	0.25	2	23.50	853	869
Zeta_toxin	Zeta toxin	0.15	3	20.10	853	874
FeoB_N	Ferrous iron transport protein B	0.33	2	21.20	854	875
SRP54	SRP54-type protein, GTPase domain	0.059	5	20.50	854	872
AAA_22	AAA domain	0.016	7	27.00	854	875
AAA_33	AAA domain	0.0089	8	27.00	854	876
NACHT	NACHT domain	0.028	6	20.40	854	883
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.0082	7	20.70	854	875
MMR_HSR1	GTPase of unknown function	0.033	6	24.50	855	875
AAA_28	AAA domain	0.033	6	27.00	855	877
AAA_14	AAA domain	0.32	3	27.00	855	874
AAA_24	AAA domain	0.14	3	27.00	855	869
Rad17	Rad17 cell cycle checkpoint protein	0.36	2	19.70	855	881
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.041	5	21.60	855	871
AAA_18	AAA domain	0.0063	9	29.40	856	875
AAA	ATPase family associated with various cellular activities (AAA)	0.043	6	20.80	856	910
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.056	5	20.50	856	875
AAA_17	AAA domain	0.15	4	27.00	857	872
SMC_N	RecF/RecN/SMC N terminal domain	0.0057	8	40.00	973	1029
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	7.4E-05	14	27.00	982	1026
AAA_15	AAA ATPase domain	0.2	3	32.10	982	1024
NTPase_1	NTPase	0.51	2	23.90	999	1030
ABC2_membrane_7	ABC-2 type transporter	2.1E-10	32	22.70	1022	1096
ABC2_membrane	ABC-2 type transporter	0	182	25.50	1138	1352
ABC2_membrane_7	ABC-2 type transporter	0.1	3	22.70	1185	1305
ABC2_membrane_3	ABC-2 family transporter protein	0.0024	9	31.60	1192	1397
DUF2953	Protein of unknown function (DUF2953)	0.00083	11	21.70	1272	1302
PDR_CDR	CDR ABC transporter	0.0024	9	20.50	1370	1411