c2pfam

AT2G37400.1 :

Domain Description Evalue Bits GA Start End
PknG_TPR Protein kinase G tetratricopeptide repeat 0.33 0 27.00 95 191
CP12 CP12 domain 0.0014 10 21.20 100 132
RPN7 26S proteasome subunit RPN7 0.0047 7 25.30 104 204
TPR_14 Tetratricopeptide repeat 0.0055 8 23.50 112 138
TPR_9 Tetratricopeptide repeat 0.17 3 35.00 113 133
TPR_20 Tetratricopeptide repeat 0.0071 7 25.00 116 157
TPR_16 Tetratricopeptide repeat 7.8E-05 14 32.70 117 159
BTAD Bacterial transcriptional activator domain 0.31 2 21.00 118 162
CotJB CotJB protein 0.00023 12 29.00 119 149
TPR_19 Tetratricopeptide repeat 3.9E-06 18 25.00 119 173
NARP1 NMDA receptor-regulated protein 1 1.5E-06 18 21.80 120 188
HrpB1_HrpK Bacterial type III secretion protein (HrpB1_HrpK) 0.00018 12 24.00 122 193
TPR_14 Tetratricopeptide repeat 0.0092 8 23.50 131 166
TPR_9 Tetratricopeptide repeat 0.0074 7 35.00 141 197
TPR_2 Tetratricopeptide repeat 0.021 6 22.40 142 162
PPR PPR repeat 0.16 3 25.00 142 158
TPR_8 Tetratricopeptide repeat 0.38 2 25.70 145 162
TPR_1 Tetratricopeptide repeat 0.5 1 20.40 147 162
DUF4919 Domain of unknown function (DUF4919) 0.011 6 29.00 163 217
TPR_8 Tetratricopeptide repeat 0.12 3 25.70 169 188
TPR_16 Tetratricopeptide repeat 0.0013 10 32.70 170 217
TPR_2 Tetratricopeptide repeat 0.027 5 22.40 170 195
TPR_1 Tetratricopeptide repeat 0.25 2 20.40 170 195
TPR_14 Tetratricopeptide repeat 0.012 7 23.50 171 204
TPR_19 Tetratricopeptide repeat 0.24 3 25.00 178 210
TPR_6 Tetratricopeptide repeat 0.79 1 26.30 178 195
BTAD Bacterial transcriptional activator domain 0.17 3 21.00 178 219
TPR_17 Tetratricopeptide repeat 0.068 4 24.40 187 213
TPR_8 Tetratricopeptide repeat 0.055 5 25.70 199 219
TPR_10 Tetratricopeptide repeat 0.19 2 27.50 200 218
PknG_TPR Protein kinase G tetratricopeptide repeat 0.00019 11 27.00 209 304
RPN7 26S proteasome subunit RPN7 0.12 3 25.30 220 267
TPR_20 Tetratricopeptide repeat 0.036 5 25.00 230 270
HrpB1_HrpK Bacterial type III secretion protein (HrpB1_HrpK) 0.047 4 24.00 240 271
TPR_14 Tetratricopeptide repeat 0.00091 11 23.50 243 276
DUF4919 Domain of unknown function (DUF4919) 0.00094 10 29.00 245 303
NARP1 NMDA receptor-regulated protein 1 0.0059 6 21.80 246 319
TPR_8 Tetratricopeptide repeat 0.013 7 25.70 246 270
BTAD Bacterial transcriptional activator domain 0.0055 8 21.00 247 302
TPR_11 TPR repeat 0.00011 12 26.80 248 283
TPR_19 Tetratricopeptide repeat 0.00088 10 25.00 251 294
TPR_2 Tetratricopeptide repeat 0.00052 11 22.40 252 272
TPR_1 Tetratricopeptide repeat 0.013 6 20.40 252 270
PPR PPR repeat 0.0063 8 25.00 252 268
TPR_10 Tetratricopeptide repeat 0.039 5 27.50 253 265
TPR_9 Tetratricopeptide repeat 0.12 3 35.00 253 305
TPR_6 Tetratricopeptide repeat 0.0046 8 26.30 253 271
TPR_16 Tetratricopeptide repeat 0.0012 10 32.70 253 305
TPR_17 Tetratricopeptide repeat 0.013 7 24.40 261 293
TPR_1 Tetratricopeptide repeat 0.022 5 20.40 276 298
TPR_2 Tetratricopeptide repeat 0.00085 10 22.40 276 306
TPR_14 Tetratricopeptide repeat 0.71 2 23.50 276 311
TPR_10 Tetratricopeptide repeat 0.52 1 27.50 280 298
TPR_8 Tetratricopeptide repeat 0.59 1 25.70 282 298

333

PknG_TPR
CP12
RPN7
TPR_14
TPR_9
TPR_20
TPR_16
BTAD
CotJB
TPR_19
NARP1
HrpB1_HrpK
TPR_14
TPR_9
TPR_2
PPR
TPR_8
TPR_1
DUF4919
TPR_8
TPR_16
TPR_2
TPR_1
TPR_14
TPR_19
TPR_6
BTAD
TPR_17
TPR_8
TPR_10
PknG_TPR
RPN7
TPR_20
HrpB1_HrpK
TPR_14
DUF4919
NARP1
TPR_8
BTAD
TPR_11
TPR_19
TPR_2
TPR_1
PPR
TPR_10
TPR_9
TPR_6
TPR_16
TPR_17
TPR_1
TPR_2
TPR_14
TPR_10
TPR_8

References:

PknG_TPR

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_20

TPR_19

TPR_17

TPR_16

TPR_14

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_11

TPR_10

NARP1
11297529 N-methyl-D-aspartate receptors regulate a group of transiently expressed genes in the developing brain. J Biol Chem. 2001;276:14257-14263.

CP12

TPR_6

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

DUF4919

HrpB1_HrpK

CotJB

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_9

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PknG_TPR	Protein kinase G tetratricopeptide repeat	0.33	0	27.00	95	191
CP12	CP12 domain	0.0014	10	21.20	100	132
RPN7	26S proteasome subunit RPN7	0.0047	7	25.30	104	204
TPR_14	Tetratricopeptide repeat	0.0055	8	23.50	112	138
TPR_9	Tetratricopeptide repeat	0.17	3	35.00	113	133
TPR_20	Tetratricopeptide repeat	0.0071	7	25.00	116	157
TPR_16	Tetratricopeptide repeat	7.8E-05	14	32.70	117	159
BTAD	Bacterial transcriptional activator domain	0.31	2	21.00	118	162
CotJB	CotJB protein	0.00023	12	29.00	119	149
TPR_19	Tetratricopeptide repeat	3.9E-06	18	25.00	119	173
NARP1	NMDA receptor-regulated protein 1	1.5E-06	18	21.80	120	188
HrpB1_HrpK	Bacterial type III secretion protein (HrpB1_HrpK)	0.00018	12	24.00	122	193
TPR_14	Tetratricopeptide repeat	0.0092	8	23.50	131	166
TPR_9	Tetratricopeptide repeat	0.0074	7	35.00	141	197
TPR_2	Tetratricopeptide repeat	0.021	6	22.40	142	162
PPR	PPR repeat	0.16	3	25.00	142	158
TPR_8	Tetratricopeptide repeat	0.38	2	25.70	145	162
TPR_1	Tetratricopeptide repeat	0.5	1	20.40	147	162
DUF4919	Domain of unknown function (DUF4919)	0.011	6	29.00	163	217
TPR_8	Tetratricopeptide repeat	0.12	3	25.70	169	188
TPR_16	Tetratricopeptide repeat	0.0013	10	32.70	170	217
TPR_2	Tetratricopeptide repeat	0.027	5	22.40	170	195
TPR_1	Tetratricopeptide repeat	0.25	2	20.40	170	195
TPR_14	Tetratricopeptide repeat	0.012	7	23.50	171	204
TPR_19	Tetratricopeptide repeat	0.24	3	25.00	178	210
TPR_6	Tetratricopeptide repeat	0.79	1	26.30	178	195
BTAD	Bacterial transcriptional activator domain	0.17	3	21.00	178	219
TPR_17	Tetratricopeptide repeat	0.068	4	24.40	187	213
TPR_8	Tetratricopeptide repeat	0.055	5	25.70	199	219
TPR_10	Tetratricopeptide repeat	0.19	2	27.50	200	218
PknG_TPR	Protein kinase G tetratricopeptide repeat	0.00019	11	27.00	209	304
RPN7	26S proteasome subunit RPN7	0.12	3	25.30	220	267
TPR_20	Tetratricopeptide repeat	0.036	5	25.00	230	270
HrpB1_HrpK	Bacterial type III secretion protein (HrpB1_HrpK)	0.047	4	24.00	240	271
TPR_14	Tetratricopeptide repeat	0.00091	11	23.50	243	276
DUF4919	Domain of unknown function (DUF4919)	0.00094	10	29.00	245	303
NARP1	NMDA receptor-regulated protein 1	0.0059	6	21.80	246	319
TPR_8	Tetratricopeptide repeat	0.013	7	25.70	246	270
BTAD	Bacterial transcriptional activator domain	0.0055	8	21.00	247	302
TPR_11	TPR repeat	0.00011	12	26.80	248	283
TPR_19	Tetratricopeptide repeat	0.00088	10	25.00	251	294
TPR_2	Tetratricopeptide repeat	0.00052	11	22.40	252	272
TPR_1	Tetratricopeptide repeat	0.013	6	20.40	252	270
PPR	PPR repeat	0.0063	8	25.00	252	268
TPR_10	Tetratricopeptide repeat	0.039	5	27.50	253	265
TPR_9	Tetratricopeptide repeat	0.12	3	35.00	253	305
TPR_6	Tetratricopeptide repeat	0.0046	8	26.30	253	271
TPR_16	Tetratricopeptide repeat	0.0012	10	32.70	253	305
TPR_17	Tetratricopeptide repeat	0.013	7	24.40	261	293
TPR_1	Tetratricopeptide repeat	0.022	5	20.40	276	298
TPR_2	Tetratricopeptide repeat	0.00085	10	22.40	276	306
TPR_14	Tetratricopeptide repeat	0.71	2	23.50	276	311
TPR_10	Tetratricopeptide repeat	0.52	1	27.50	280	298
TPR_8	Tetratricopeptide repeat	0.59	1	25.70	282	298