c2pfam

AT2G38420.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 0.43 -1 27.00 50 100
MNE1 Mitochondrial splicing apparatus component 0.29 0 22.70 58 97
Clathrin Region in Clathrin and VPS 0.93 -1 23.60 59 96
PPR_2 PPR repeat family 0.028 4 30.00 65 84
PPR_2 PPR repeat family 2E-05 14 30.00 114 150
PPR PPR repeat 3.2E-05 14 25.00 114 136
PPR_3 Pentatricopeptide repeat domain 0.0076 6 25.00 115 153
PPR_1 PPR repeat 0.016 4 23.80 117 131
PPR_long Pentacotripeptide-repeat region of PRORP 6E-08 22 27.00 122 277
PPR_1 PPR repeat 0.34 0 23.80 139 149
MNE1 Mitochondrial splicing apparatus component 7.4E-05 12 22.70 149 233
PPR_3 Pentatricopeptide repeat domain 0.0045 7 25.00 166 210
PPR_1 PPR repeat 3E-11 32 23.80 174 206
PPR PPR repeat 5.6E-06 16 25.00 180 208
PPR_2 PPR repeat family 4.8E-07 19 30.00 181 226
Hairy_orange Hairy Orange 5.2E-05 13 20.70 196 222
PPR_3 Pentatricopeptide repeat domain 4.4E-06 16 25.00 240 294
PPR PPR repeat 0.00029 11 25.00 254 280
PPR_2 PPR repeat family 2E-09 27 30.00 254 296
PPR_long Pentacotripeptide-repeat region of PRORP 2E-10 30 27.00 269 370
PPR_1 PPR repeat 0.0067 6 23.80 282 295
PPR_2 PPR repeat family 1.7E-15 46 30.00 284 333
PPR PPR repeat 0.0011 9 25.00 287 316
PPR_3 Pentatricopeptide repeat domain 4.4E-13 39 25.00 307 368
PPR_1 PPR repeat 6.1E-12 35 23.80 316 347
PPR_2 PPR repeat family 7.7E-21 64 30.00 319 368
PPR PPR repeat 2.3E-08 23 25.00 322 351
MNE1 Mitochondrial splicing apparatus component 0.35 0 22.70 330 399
PPR_long Pentacotripeptide-repeat region of PRORP 4.5E-08 22 27.00 340 449
PPR_1 PPR repeat 6.1E-13 38 23.80 351 383
PPR_2 PPR repeat family 2.1E-17 53 30.00 354 401
Mtf2 Mtf2 family 1.2E-08 24 27.00 355 406
PPR PPR repeat 2.9E-11 33 25.00 357 387
PPR_3 Pentatricopeptide repeat domain 1.8E-05 14 25.00 362 401
Clathrin Region in Clathrin and VPS 0.0023 7 23.60 382 449
PPR_1 PPR repeat 0.0017 8 23.80 385 419
PPR PPR repeat 0.029 4 25.00 393 416
PPR_2 PPR repeat family 0.77 -1 30.00 408 420
PPR PPR repeat 0.95 -1 25.00 420 434
PPR PPR repeat 0.0059 6 25.00 432 449
PPR_2 PPR repeat family 0.0033 7 30.00 432 449
PPR_1 PPR repeat 6.6E-05 12 23.80 433 449

453

PPR_long
MNE1
Clathrin
PPR_2
PPR_2
PPR
PPR_3
PPR_1
PPR_long
PPR_1
MNE1
PPR_3
PPR_1
PPR
PPR_2
Hairy_orange
PPR_3
PPR
PPR_2
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
MNE1
PPR_long
PPR_1
PPR_2
Mtf2
PPR
PPR_3
Clathrin
PPR_1
PPR
PPR_2
PPR
PPR
PPR_2
PPR_1

References:

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Hairy_orange
10403790 Identification and expression of a novel family of bHLH cDNAs related to Drosophila hairy and enhancer of split. Biochem Biophys Res Commun 1999;260:459-465.
8524259 Specificity for the hairy/enhancer of split basic helix-loop-helix (bHLH) proteins maps outside the bHLH domain and suggests two separable modes of transcriptional repression. Mol Cell Biol 1995;15:6923-6931.

Mtf2

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

PPR_long

PPR_3

PPR_2

PPR_1

MNE1

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	0.43	-1	27.00	50	100
MNE1	Mitochondrial splicing apparatus component	0.29	0	22.70	58	97
Clathrin	Region in Clathrin and VPS	0.93	-1	23.60	59	96
PPR_2	PPR repeat family	0.028	4	30.00	65	84
PPR_2	PPR repeat family	2E-05	14	30.00	114	150
PPR	PPR repeat	3.2E-05	14	25.00	114	136
PPR_3	Pentatricopeptide repeat domain	0.0076	6	25.00	115	153
PPR_1	PPR repeat	0.016	4	23.80	117	131
PPR_long	Pentacotripeptide-repeat region of PRORP	6E-08	22	27.00	122	277
PPR_1	PPR repeat	0.34	0	23.80	139	149
MNE1	Mitochondrial splicing apparatus component	7.4E-05	12	22.70	149	233
PPR_3	Pentatricopeptide repeat domain	0.0045	7	25.00	166	210
PPR_1	PPR repeat	3E-11	32	23.80	174	206
PPR	PPR repeat	5.6E-06	16	25.00	180	208
PPR_2	PPR repeat family	4.8E-07	19	30.00	181	226
Hairy_orange	Hairy Orange	5.2E-05	13	20.70	196	222
PPR_3	Pentatricopeptide repeat domain	4.4E-06	16	25.00	240	294
PPR	PPR repeat	0.00029	11	25.00	254	280
PPR_2	PPR repeat family	2E-09	27	30.00	254	296
PPR_long	Pentacotripeptide-repeat region of PRORP	2E-10	30	27.00	269	370
PPR_1	PPR repeat	0.0067	6	23.80	282	295
PPR_2	PPR repeat family	1.7E-15	46	30.00	284	333
PPR	PPR repeat	0.0011	9	25.00	287	316
PPR_3	Pentatricopeptide repeat domain	4.4E-13	39	25.00	307	368
PPR_1	PPR repeat	6.1E-12	35	23.80	316	347
PPR_2	PPR repeat family	7.7E-21	64	30.00	319	368
PPR	PPR repeat	2.3E-08	23	25.00	322	351
MNE1	Mitochondrial splicing apparatus component	0.35	0	22.70	330	399
PPR_long	Pentacotripeptide-repeat region of PRORP	4.5E-08	22	27.00	340	449
PPR_1	PPR repeat	6.1E-13	38	23.80	351	383
PPR_2	PPR repeat family	2.1E-17	53	30.00	354	401
Mtf2	Mtf2 family	1.2E-08	24	27.00	355	406
PPR	PPR repeat	2.9E-11	33	25.00	357	387
PPR_3	Pentatricopeptide repeat domain	1.8E-05	14	25.00	362	401
Clathrin	Region in Clathrin and VPS	0.0023	7	23.60	382	449
PPR_1	PPR repeat	0.0017	8	23.80	385	419
PPR	PPR repeat	0.029	4	25.00	393	416
PPR_2	PPR repeat family	0.77	-1	30.00	408	420
PPR	PPR repeat	0.95	-1	25.00	420	434
PPR	PPR repeat	0.0059	6	25.00	432	449
PPR_2	PPR repeat family	0.0033	7	30.00	432	449
PPR_1	PPR repeat	6.6E-05	12	23.80	433	449