c2pfam

AT2G39350.1 :

Domain Description Evalue Bits GA Start End
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 2.4E-06 17 23.10 100 146
RsgA_GTPase RsgA GTPase 4.8E-06 17 30.00 105 143
AAA_16 AAA ATPase domain 1.6E-07 22 32.60 109 158
ABC_tran ABC transporter 1.4E-27 87 23.10 110 262
AAA_25 AAA domain 1.9E-05 15 27.00 113 148
AAA_22 AAA domain 1.2E-05 16 27.00 119 234
AAA_29 P-loop containing region of AAA domain 2E-08 25 27.00 119 141
SMC_N RecF/RecN/SMC N terminal domain 0.00018 12 40.00 120 141
NACHT NACHT domain 1.1E-05 16 20.40 122 152
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 6.4E-05 13 27.00 122 141
MMR_HSR1 GTPase of unknown function 2.8E-05 15 24.50 123 146
DUF87 Domain of unknown function DUF87 2.6E-05 15 20.90 123 149
APS_kinase Adenylylsulphate kinase 0.0017 9 20.70 123 164
AAA_23 AAA domain 0.00039 12 27.00 124 140
AAA_28 AAA domain 0.0001 13 27.00 124 143
RNA_helicase RNA helicase 0.00024 12 21.50 125 148
AAA_18 AAA domain 0.00022 12 29.40 125 144
DUF815 Protein of unknown function (DUF815) 0.0004 10 20.10 125 160
Thymidylate_kin Thymidylate kinase 0.00028 11 21.10 127 193
SMC_N RecF/RecN/SMC N terminal domain 0.038 4 40.00 249 293
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.013 6 27.00 251 293
APS_kinase Adenylylsulphate kinase 0.41 1 20.70 272 294
ABC2_membrane_7 ABC-2 type transporter 1E-07 22 22.70 291 347
ABC2_membrane ABC-2 type transporter 0 153 25.50 436 644
ABC2_membrane_3 ABC-2 family transporter protein 6.4E-06 16 31.60 480 629
ABC2_membrane_7 ABC-2 type transporter 0.35 0 22.70 699 734

740

MeaB
RsgA_GTPase
AAA_16
ABC_tran
AAA_25
AAA_22
AAA_29
SMC_N
NACHT
AAA_21
MMR_HSR1
DUF87
APS_kinase
AAA_23
AAA_28
RNA_helicase
AAA_18
DUF815
Thymidylate_kin
SMC_N
AAA_21
APS_kinase
ABC2_membrane_7
ABC2_membrane
ABC2_membrane_3
ABC2_membrane_7

References:

DUF815

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

ABC2_membrane
1303751 A new subfamily of bacterial ABC-type transport systems catalyzing export of drugs and carbohydrates. Protein Sci 1992;1:1326-1332.

RsgA_GTPase

Thymidylate_kin

ABC2_membrane_3

APS_kinase
9786849 Adenosine 5'-phosphosulfate kinase from Penicillium chrysogenum. site- directed mutagenesis at putative phosphoryl-accepting and ATP P-loop residues. J Biol Chem 1998;273:28583-28589.

ABC2_membrane_7

MeaB

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

DUF87

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_29

AAA_28

AAA_25

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

AAA_21

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	2.4E-06	17	23.10	100	146
RsgA_GTPase	RsgA GTPase	4.8E-06	17	30.00	105	143
AAA_16	AAA ATPase domain	1.6E-07	22	32.60	109	158
ABC_tran	ABC transporter	1.4E-27	87	23.10	110	262
AAA_25	AAA domain	1.9E-05	15	27.00	113	148
AAA_22	AAA domain	1.2E-05	16	27.00	119	234
AAA_29	P-loop containing region of AAA domain	2E-08	25	27.00	119	141
SMC_N	RecF/RecN/SMC N terminal domain	0.00018	12	40.00	120	141
NACHT	NACHT domain	1.1E-05	16	20.40	122	152
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	6.4E-05	13	27.00	122	141
MMR_HSR1	GTPase of unknown function	2.8E-05	15	24.50	123	146
DUF87	Domain of unknown function DUF87	2.6E-05	15	20.90	123	149
APS_kinase	Adenylylsulphate kinase	0.0017	9	20.70	123	164
AAA_23	AAA domain	0.00039	12	27.00	124	140
AAA_28	AAA domain	0.0001	13	27.00	124	143
RNA_helicase	RNA helicase	0.00024	12	21.50	125	148
AAA_18	AAA domain	0.00022	12	29.40	125	144
DUF815	Protein of unknown function (DUF815)	0.0004	10	20.10	125	160
Thymidylate_kin	Thymidylate kinase	0.00028	11	21.10	127	193
SMC_N	RecF/RecN/SMC N terminal domain	0.038	4	40.00	249	293
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.013	6	27.00	251	293
APS_kinase	Adenylylsulphate kinase	0.41	1	20.70	272	294
ABC2_membrane_7	ABC-2 type transporter	1E-07	22	22.70	291	347
ABC2_membrane	ABC-2 type transporter	0	153	25.50	436	644
ABC2_membrane_3	ABC-2 family transporter protein	6.4E-06	16	31.60	480	629
ABC2_membrane_7	ABC-2 type transporter	0.35	0	22.70	699	734