c2pfam

AT2G39480.1 :

Domain Description Evalue Bits GA Start End
ABC_membrane ABC transporter transmembrane region 0 147 22.00 88 362
ABC_tran ABC transporter 5.8E-28 89 23.10 433 577
AAA_7 P-loop containing dynein motor region 0.01 6 25.80 436 458
Zeta_toxin Zeta toxin 0.00039 10 20.10 439 481
AAA_29 P-loop containing region of AAA domain 0.00014 12 27.00 440 457
SMC_N RecF/RecN/SMC N terminal domain 0.00017 12 40.00 440 457
AAA_15 AAA ATPase domain 7.4E-06 16 32.10 440 467
RsgA_GTPase RsgA GTPase 0.02 5 30.00 440 460
AAA_30 AAA domain 0.1 3 27.00 441 466
AAA_23 AAA domain 0.0018 9 27.00 441 457
AAA_22 AAA domain 0.017 6 27.00 441 504
AAA_16 AAA ATPase domain 0.012 6 32.60 441 483
DUF87 Domain of unknown function DUF87 0.35 1 20.90 441 463
Ploopntkinase3 P-loop Nucleotide Kinase3 0.19 2 27.00 442 465
NB-ARC NB-ARC domain 0.14 2 23.50 442 457
G-alpha G-protein alpha subunit 0.0028 7 20.10 442 473
APS_kinase Adenylylsulphate kinase 0.024 5 20.70 443 480
MMR_HSR1 GTPase of unknown function 0.022 5 24.50 443 457
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00031 11 27.00 444 463
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.32 1 27.00 563 604
SMC_N RecF/RecN/SMC N terminal domain 0.15 2 40.00 569 618
ABC_membrane ABC transporter transmembrane region 0 141 22.00 841 1104
DUF1240 Protein of unknown function (DUF1240) 9E-05 14 22.00 843 889
ABC_tran ABC transporter 1.1E-33 107 23.10 1176 1324
AAA_7 P-loop containing dynein motor region 0.014 5 25.80 1178 1204
AAA_23 AAA domain 0.0067 7 27.00 1179 1206
AAA_29 P-loop containing region of AAA domain 5.9E-05 13 27.00 1181 1203
AAA_16 AAA ATPase domain 3.9E-05 15 32.60 1184 1262
AAA_30 AAA domain 0.00014 12 27.00 1185 1338
RsgA_GTPase RsgA GTPase 0.00072 10 30.00 1186 1207
APS_kinase Adenylylsulphate kinase 0.0032 8 20.70 1186 1223
AAA_22 AAA domain 0.0044 8 27.00 1187 1214
NB-ARC NB-ARC domain 0.0021 8 23.50 1187 1213
G-alpha G-protein alpha subunit 0.0029 7 20.10 1188 1213
AAA_15 AAA ATPase domain 0.048 4 32.10 1188 1207
SMC_N RecF/RecN/SMC N terminal domain 0.022 5 40.00 1188 1205
Zeta_toxin Zeta toxin 0.00022 11 20.10 1189 1227
MMR_HSR1 GTPase of unknown function 0.006 7 24.50 1189 1205
DUF87 Domain of unknown function DUF87 0.00056 10 20.90 1189 1220
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0058 7 27.00 1190 1210
Ploopntkinase3 P-loop Nucleotide Kinase3 0.006 7 27.00 1191 1292
SMC_N RecF/RecN/SMC N terminal domain 0.0031 7 40.00 1296 1366

1407

ABC_membrane
ABC_tran
AAA_7
Zeta_toxin
AAA_29
SMC_N
AAA_15
RsgA_GTPase
AAA_30
AAA_23
AAA_22
AAA_16
DUF87
Ploopntkinase3
NB-ARC
G-alpha
APS_kinase
MMR_HSR1
AAA_21
AAA_21
SMC_N
ABC_membrane
DUF1240
ABC_tran
AAA_7
AAA_23
AAA_29
AAA_16
AAA_30
RsgA_GTPase
APS_kinase
AAA_22
NB-ARC
G-alpha
AAA_15
SMC_N
Zeta_toxin
MMR_HSR1
DUF87
AAA_21
Ploopntkinase3
SMC_N

References:

AAA_16

AAA_15

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

G-alpha
8073283 Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis. Science 1994;265:1405-1412.
8851656 How G proteins work: a continuing story. Trends Biochem Sci 1996;21:41-44.

ABC_membrane

RsgA_GTPase

DUF1240

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

APS_kinase
9786849 Adenosine 5'-phosphosulfate kinase from Penicillium chrysogenum. site- directed mutagenesis at putative phosphoryl-accepting and ATP P-loop residues. J Biol Chem 1998;273:28583-28589.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

AAA_7

Ploopntkinase3

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

AAA_30

AAA_29

DUF87

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

AAA_21

Domain	Description	Evalue	Bits	GA	Start	End
ABC_membrane	ABC transporter transmembrane region	0	147	22.00	88	362
ABC_tran	ABC transporter	5.8E-28	89	23.10	433	577
AAA_7	P-loop containing dynein motor region	0.01	6	25.80	436	458
Zeta_toxin	Zeta toxin	0.00039	10	20.10	439	481
AAA_29	P-loop containing region of AAA domain	0.00014	12	27.00	440	457
SMC_N	RecF/RecN/SMC N terminal domain	0.00017	12	40.00	440	457
AAA_15	AAA ATPase domain	7.4E-06	16	32.10	440	467
RsgA_GTPase	RsgA GTPase	0.02	5	30.00	440	460
AAA_30	AAA domain	0.1	3	27.00	441	466
AAA_23	AAA domain	0.0018	9	27.00	441	457
AAA_22	AAA domain	0.017	6	27.00	441	504
AAA_16	AAA ATPase domain	0.012	6	32.60	441	483
DUF87	Domain of unknown function DUF87	0.35	1	20.90	441	463
Ploopntkinase3	P-loop Nucleotide Kinase3	0.19	2	27.00	442	465
NB-ARC	NB-ARC domain	0.14	2	23.50	442	457
G-alpha	G-protein alpha subunit	0.0028	7	20.10	442	473
APS_kinase	Adenylylsulphate kinase	0.024	5	20.70	443	480
MMR_HSR1	GTPase of unknown function	0.022	5	24.50	443	457
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00031	11	27.00	444	463
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.32	1	27.00	563	604
SMC_N	RecF/RecN/SMC N terminal domain	0.15	2	40.00	569	618
ABC_membrane	ABC transporter transmembrane region	0	141	22.00	841	1104
DUF1240	Protein of unknown function (DUF1240)	9E-05	14	22.00	843	889
ABC_tran	ABC transporter	1.1E-33	107	23.10	1176	1324
AAA_7	P-loop containing dynein motor region	0.014	5	25.80	1178	1204
AAA_23	AAA domain	0.0067	7	27.00	1179	1206
AAA_29	P-loop containing region of AAA domain	5.9E-05	13	27.00	1181	1203
AAA_16	AAA ATPase domain	3.9E-05	15	32.60	1184	1262
AAA_30	AAA domain	0.00014	12	27.00	1185	1338
RsgA_GTPase	RsgA GTPase	0.00072	10	30.00	1186	1207
APS_kinase	Adenylylsulphate kinase	0.0032	8	20.70	1186	1223
AAA_22	AAA domain	0.0044	8	27.00	1187	1214
NB-ARC	NB-ARC domain	0.0021	8	23.50	1187	1213
G-alpha	G-protein alpha subunit	0.0029	7	20.10	1188	1213
AAA_15	AAA ATPase domain	0.048	4	32.10	1188	1207
SMC_N	RecF/RecN/SMC N terminal domain	0.022	5	40.00	1188	1205
Zeta_toxin	Zeta toxin	0.00022	11	20.10	1189	1227
MMR_HSR1	GTPase of unknown function	0.006	7	24.50	1189	1205
DUF87	Domain of unknown function DUF87	0.00056	10	20.90	1189	1220
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0058	7	27.00	1190	1210
Ploopntkinase3	P-loop Nucleotide Kinase3	0.006	7	27.00	1191	1292
SMC_N	RecF/RecN/SMC N terminal domain	0.0031	7	40.00	1296	1366