c2pfam

AT2G39620.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 5.2E-14 42 30.00 62 111
PPR_1 PPR repeat 5.7E-06 16 23.80 62 90
PPR_3 Pentatricopeptide repeat domain 6.2E-05 13 25.00 63 112
PPR PPR repeat 1.8E-09 28 25.00 65 93
Vps39_1 Vacuolar sorting protein 39 domain 1 0.27 2 21.40 67 93
PPR_long Pentacotripeptide-repeat region of PRORP 0.00046 9 27.00 101 178
PPR_3 Pentatricopeptide repeat domain 3.9E-05 14 25.00 126 162
PPR_1 PPR repeat 1.8E-06 18 23.80 129 161
PPR_2 PPR repeat family 0.00068 10 30.00 134 162
PPR PPR repeat 2E-05 15 25.00 139 165
RPN7 26S proteasome subunit RPN7 0.7 -1 25.30 140 166
PPR_2 PPR repeat family 8.7E-10 29 30.00 164 203
PPR_1 PPR repeat 7.4E-07 19 23.80 165 193
PPR_3 Pentatricopeptide repeat domain 0.11 3 25.00 165 193
PPR PPR repeat 1.2E-09 28 25.00 167 195
PPR PPR repeat 0.0047 7 25.00 240 263
PPR_2 PPR repeat family 0.22 2 30.00 240 259
PPR_1 PPR repeat 0.014 5 23.80 240 259
PPR_2 PPR repeat family 5.4E-06 17 30.00 264 301
PPR_1 PPR repeat 0.56 0 23.80 265 292
PPR PPR repeat 1.3E-09 28 25.00 267 294
PPR_3 Pentatricopeptide repeat domain 0.61 0 25.00 287 315
PPR_long Pentacotripeptide-repeat region of PRORP 0.0011 8 27.00 294 413
PPR_3 Pentatricopeptide repeat domain 0.084 3 25.00 324 360
PPR_2 PPR repeat family 0.0011 9 30.00 334 364
PPR PPR repeat 3.3E-05 14 25.00 339 364
PPR_1 PPR repeat 0.039 4 23.80 339 358
Vps39_1 Vacuolar sorting protein 39 domain 1 0.0036 8 21.40 339 394
RPN7 26S proteasome subunit RPN7 0.83 -1 25.30 340 364
PPR_2 PPR repeat family 1.7E-14 44 30.00 364 412
PPR_1 PPR repeat 6.8E-06 16 23.80 365 392
PPR_3 Pentatricopeptide repeat domain 2.3E-05 14 25.00 365 411
PPR PPR repeat 9.3E-10 28 25.00 367 394
TPR_1 Tetratricopeptide repeat 0.0061 7 20.40 368 389
TPR_14 Tetratricopeptide repeat 0.0003 12 23.50 369 392
TPR_12 Tetratricopeptide repeat 0.0027 8 30.10 372 395
RPN7 26S proteasome subunit RPN7 0.28 1 25.30 374 394
TPR_2 Tetratricopeptide repeat 0.016 6 22.40 375 390
TPR_6 Tetratricopeptide repeat 0.044 5 26.30 375 390
TPR_7 Tetratricopeptide repeat 0.0067 7 27.90 376 396
PPR_long Pentacotripeptide-repeat region of PRORP 3.4E-05 13 27.00 385 515
PPR_1 PPR repeat 0.11 2 23.80 397 410
PPR PPR repeat 0.00027 11 25.00 438 462
PPR_2 PPR repeat family 0.0097 6 30.00 438 460
RPN7 26S proteasome subunit RPN7 0.13 2 25.30 438 462
NatB_MDM20 N-acetyltransferase B complex (NatB) non catalytic subunit 0.0024 7 20.50 439 473
PPR_1 PPR repeat 0.12 2 23.80 441 461
TPR_14 Tetratricopeptide repeat 0.12 4 23.50 443 463
TPR_1 Tetratricopeptide repeat 0.031 4 20.40 445 461
TPR_2 Tetratricopeptide repeat 0.17 2 22.40 446 461
PPR_2 PPR repeat family 2.3E-11 34 30.00 465 512
PPR_1 PPR repeat 0.0046 7 23.80 466 494
PPR_3 Pentatricopeptide repeat domain 0.00018 12 25.00 466 501
TPR_12 Tetratricopeptide repeat 0.05 4 30.10 466 491
TPR_1 Tetratricopeptide repeat 0.61 0 20.40 467 491
PPR PPR repeat 8.3E-07 19 25.00 468 498
TPR_2 Tetratricopeptide repeat 0.39 1 22.40 469 491
TPR_7 Tetratricopeptide repeat 0.19 2 27.90 469 491
RPN7 26S proteasome subunit RPN7 0.016 5 25.30 470 494
TPR_14 Tetratricopeptide repeat 0.51 2 23.50 470 492
PPR_long Pentacotripeptide-repeat region of PRORP 0.00012 11 27.00 473 515
PPR_2 PPR repeat family 0.16 2 30.00 542 561
PPR_3 Pentatricopeptide repeat domain 4.6E-06 17 25.00 563 611
PPR_1 PPR repeat 2.4E-05 14 23.80 564 596
PPR_2 PPR repeat family 9.8E-14 41 30.00 567 613
PPR PPR repeat 1.6E-09 28 25.00 570 598
RPN7 26S proteasome subunit RPN7 0.49 0 25.30 576 605
NatB_MDM20 N-acetyltransferase B complex (NatB) non catalytic subunit 0.31 0 20.50 576 608
TPR_6 Tetratricopeptide repeat 0.28 2 26.30 579 594
PPR_long Pentacotripeptide-repeat region of PRORP 0.026 4 27.00 585 616
PPR PPR repeat 7.5E-05 13 25.00 643 666
PPR_2 PPR repeat family 0.13 3 30.00 643 666
PPR_1 PPR repeat 0.16 2 23.80 643 660
RPN7 26S proteasome subunit RPN7 0.13 2 25.30 644 669
PPR_3 Pentatricopeptide repeat domain 2.2E-05 15 25.00 670 715
PPR_2 PPR repeat family 5.4E-12 36 30.00 670 715
PPR PPR repeat 1E-08 25 25.00 671 699
PPR_1 PPR repeat 0.0045 7 23.80 671 696
PPR_long Pentacotripeptide-repeat region of PRORP 0.0051 6 27.00 686 768
PPR_1 PPR repeat 0.0025 8 23.80 700 731
PPR PPR repeat 3E-06 17 25.00 706 734
PPR_2 PPR repeat family 0.036 4 30.00 711 734
PPR_1 PPR repeat 6.5E-05 13 23.80 741 768
PPR_2 PPR repeat family 0.026 5 30.00 743 768
PPR PPR repeat 1E-05 16 25.00 744 769
TPR_14 Tetratricopeptide repeat 0.32 2 23.50 744 768

836

PPR_2
PPR_1
PPR_3
PPR
Vps39_1
PPR_long
PPR_3
PPR_1
PPR_2
PPR
RPN7
PPR_2
PPR_1
PPR_3
PPR
PPR
PPR_2
PPR_1
PPR_2
PPR_1
PPR
PPR_3
PPR_long
PPR_3
PPR_2
PPR
PPR_1
Vps39_1
RPN7
PPR_2
PPR_1
PPR_3
PPR
TPR_1
TPR_14
TPR_12
RPN7
TPR_2
TPR_6
TPR_7
PPR_long
PPR_1
PPR
PPR_2
RPN7
NatB_MDM20
PPR_1
TPR_14
TPR_1
TPR_2
PPR_2
PPR_1
PPR_3
TPR_12
TPR_1
PPR
TPR_2
TPR_7
RPN7
TPR_14
PPR_long
PPR_2
PPR_3
PPR_1
PPR_2
PPR
RPN7
NatB_MDM20
TPR_6
PPR_long
PPR
PPR_2
PPR_1
RPN7
PPR_3
PPR_2
PPR
PPR_1
PPR_long
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_14

References:

TPR_7

TPR_6

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_14

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

PPR_long

PPR_3

PPR_2

PPR_1

NatB_MDM20
12808144 Mdm20 protein functions with Nat3 protein to acetylate Tpm1 protein and regulate tropomyosin-actin interactions in budding yeast. Proc Natl Acad Sci U S A. 2003;100:7644-7649.

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_12

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	5.2E-14	42	30.00	62	111
PPR_1	PPR repeat	5.7E-06	16	23.80	62	90
PPR_3	Pentatricopeptide repeat domain	6.2E-05	13	25.00	63	112
PPR	PPR repeat	1.8E-09	28	25.00	65	93
Vps39_1	Vacuolar sorting protein 39 domain 1	0.27	2	21.40	67	93
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00046	9	27.00	101	178
PPR_3	Pentatricopeptide repeat domain	3.9E-05	14	25.00	126	162
PPR_1	PPR repeat	1.8E-06	18	23.80	129	161
PPR_2	PPR repeat family	0.00068	10	30.00	134	162
PPR	PPR repeat	2E-05	15	25.00	139	165
RPN7	26S proteasome subunit RPN7	0.7	-1	25.30	140	166
PPR_2	PPR repeat family	8.7E-10	29	30.00	164	203
PPR_1	PPR repeat	7.4E-07	19	23.80	165	193
PPR_3	Pentatricopeptide repeat domain	0.11	3	25.00	165	193
PPR	PPR repeat	1.2E-09	28	25.00	167	195
PPR	PPR repeat	0.0047	7	25.00	240	263
PPR_2	PPR repeat family	0.22	2	30.00	240	259
PPR_1	PPR repeat	0.014	5	23.80	240	259
PPR_2	PPR repeat family	5.4E-06	17	30.00	264	301
PPR_1	PPR repeat	0.56	0	23.80	265	292
PPR	PPR repeat	1.3E-09	28	25.00	267	294
PPR_3	Pentatricopeptide repeat domain	0.61	0	25.00	287	315
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0011	8	27.00	294	413
PPR_3	Pentatricopeptide repeat domain	0.084	3	25.00	324	360
PPR_2	PPR repeat family	0.0011	9	30.00	334	364
PPR	PPR repeat	3.3E-05	14	25.00	339	364
PPR_1	PPR repeat	0.039	4	23.80	339	358
Vps39_1	Vacuolar sorting protein 39 domain 1	0.0036	8	21.40	339	394
RPN7	26S proteasome subunit RPN7	0.83	-1	25.30	340	364
PPR_2	PPR repeat family	1.7E-14	44	30.00	364	412
PPR_1	PPR repeat	6.8E-06	16	23.80	365	392
PPR_3	Pentatricopeptide repeat domain	2.3E-05	14	25.00	365	411
PPR	PPR repeat	9.3E-10	28	25.00	367	394
TPR_1	Tetratricopeptide repeat	0.0061	7	20.40	368	389
TPR_14	Tetratricopeptide repeat	0.0003	12	23.50	369	392
TPR_12	Tetratricopeptide repeat	0.0027	8	30.10	372	395
RPN7	26S proteasome subunit RPN7	0.28	1	25.30	374	394
TPR_2	Tetratricopeptide repeat	0.016	6	22.40	375	390
TPR_6	Tetratricopeptide repeat	0.044	5	26.30	375	390
TPR_7	Tetratricopeptide repeat	0.0067	7	27.90	376	396
PPR_long	Pentacotripeptide-repeat region of PRORP	3.4E-05	13	27.00	385	515
PPR_1	PPR repeat	0.11	2	23.80	397	410
PPR	PPR repeat	0.00027	11	25.00	438	462
PPR_2	PPR repeat family	0.0097	6	30.00	438	460
RPN7	26S proteasome subunit RPN7	0.13	2	25.30	438	462
NatB_MDM20	N-acetyltransferase B complex (NatB) non catalytic subunit	0.0024	7	20.50	439	473
PPR_1	PPR repeat	0.12	2	23.80	441	461
TPR_14	Tetratricopeptide repeat	0.12	4	23.50	443	463
TPR_1	Tetratricopeptide repeat	0.031	4	20.40	445	461
TPR_2	Tetratricopeptide repeat	0.17	2	22.40	446	461
PPR_2	PPR repeat family	2.3E-11	34	30.00	465	512
PPR_1	PPR repeat	0.0046	7	23.80	466	494
PPR_3	Pentatricopeptide repeat domain	0.00018	12	25.00	466	501
TPR_12	Tetratricopeptide repeat	0.05	4	30.10	466	491
TPR_1	Tetratricopeptide repeat	0.61	0	20.40	467	491
PPR	PPR repeat	8.3E-07	19	25.00	468	498
TPR_2	Tetratricopeptide repeat	0.39	1	22.40	469	491
TPR_7	Tetratricopeptide repeat	0.19	2	27.90	469	491
RPN7	26S proteasome subunit RPN7	0.016	5	25.30	470	494
TPR_14	Tetratricopeptide repeat	0.51	2	23.50	470	492
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00012	11	27.00	473	515
PPR_2	PPR repeat family	0.16	2	30.00	542	561
PPR_3	Pentatricopeptide repeat domain	4.6E-06	17	25.00	563	611
PPR_1	PPR repeat	2.4E-05	14	23.80	564	596
PPR_2	PPR repeat family	9.8E-14	41	30.00	567	613
PPR	PPR repeat	1.6E-09	28	25.00	570	598
RPN7	26S proteasome subunit RPN7	0.49	0	25.30	576	605
NatB_MDM20	N-acetyltransferase B complex (NatB) non catalytic subunit	0.31	0	20.50	576	608
TPR_6	Tetratricopeptide repeat	0.28	2	26.30	579	594
PPR_long	Pentacotripeptide-repeat region of PRORP	0.026	4	27.00	585	616
PPR	PPR repeat	7.5E-05	13	25.00	643	666
PPR_2	PPR repeat family	0.13	3	30.00	643	666
PPR_1	PPR repeat	0.16	2	23.80	643	660
RPN7	26S proteasome subunit RPN7	0.13	2	25.30	644	669
PPR_3	Pentatricopeptide repeat domain	2.2E-05	15	25.00	670	715
PPR_2	PPR repeat family	5.4E-12	36	30.00	670	715
PPR	PPR repeat	1E-08	25	25.00	671	699
PPR_1	PPR repeat	0.0045	7	23.80	671	696
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0051	6	27.00	686	768
PPR_1	PPR repeat	0.0025	8	23.80	700	731
PPR	PPR repeat	3E-06	17	25.00	706	734
PPR_2	PPR repeat family	0.036	4	30.00	711	734
PPR_1	PPR repeat	6.5E-05	13	23.80	741	768
PPR_2	PPR repeat family	0.026	5	30.00	743	768
PPR	PPR repeat	1E-05	16	25.00	744	769
TPR_14	Tetratricopeptide repeat	0.32	2	23.50	744	768