c2pfam

AT2G40720.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.072 3 30.00 27 49
PPR PPR repeat 0.59 0 25.00 31 48
PPR_long Pentacotripeptide-repeat region of PRORP 0.14 1 27.00 40 183
PPR_2 PPR repeat family 0.39 0 30.00 98 119
PPR PPR repeat 0.00018 11 25.00 99 119
PPR_1 PPR repeat 0.0028 7 23.80 99 119
PPR_1 PPR repeat 0.00042 9 23.80 132 159
PPR_2 PPR repeat family 6.7E-12 35 30.00 132 180
PPR PPR repeat 2.9E-09 26 25.00 135 164
PPR_1 PPR repeat 9E-05 12 23.80 163 184
PPR PPR repeat 0.23 1 25.00 170 185
DUF1475 Protein of unknown function (DUF1475) 0.0017 7 21.10 205 254
PPR_1 PPR repeat 0.1 2 23.80 209 231
PPR_3 Pentatricopeptide repeat domain 0.55 0 25.00 209 248
PPR PPR repeat 0.0003 11 25.00 209 234
PPR_2 PPR repeat family 0.0025 7 30.00 209 234
PPR_1 PPR repeat 0.85 -1 23.80 235 247
PPR_2 PPR repeat family 0.00037 10 30.00 236 281
PPR PPR repeat 0.0081 6 25.00 238 262
PPR_long Pentacotripeptide-repeat region of PRORP 0.0028 6 27.00 256 434
PPR_3 Pentatricopeptide repeat domain 0.0077 6 25.00 296 337
Vps39_1 Vacuolar sorting protein 39 domain 1 0.65 0 21.40 305 362
PPR PPR repeat 4.3E-06 16 25.00 309 335
PPR_2 PPR repeat family 0.0037 7 30.00 309 331
PPR_1 PPR repeat 0.01 5 23.80 311 331
PPR_2 PPR repeat family 2.7E-09 27 30.00 340 383
PPR PPR repeat 4.4E-06 16 25.00 340 368
PPR_3 Pentatricopeptide repeat domain 0.13 2 25.00 342 383
PPR_1 PPR repeat 0.97 -1 23.80 368 382
PPR PPR repeat 0.095 3 25.00 375 399
PPR PPR repeat 0.00044 10 25.00 412 438
PPR_2 PPR repeat family 0.8 -1 30.00 413 437
PPR_3 Pentatricopeptide repeat domain 0.22 1 25.00 413 437
PPR_2 PPR repeat family 6.8E-12 35 30.00 437 485
PPR_3 Pentatricopeptide repeat domain 0.00059 9 25.00 438 468
PPR_1 PPR repeat 3.6E-11 32 23.80 438 466
PPR PPR repeat 4.7E-12 35 25.00 440 468
Vps39_1 Vacuolar sorting protein 39 domain 1 0.49 0 21.40 441 472
TPR_19 Tetratricopeptide repeat 0.79 0 25.00 451 465
PPR_long Pentacotripeptide-repeat region of PRORP 0.0052 5 27.00 473 603
PPR_3 Pentatricopeptide repeat domain 0.034 4 25.00 503 552
PPR_1 PPR repeat 0.0027 7 23.80 506 537
PPR_2 PPR repeat family 7.8E-05 12 30.00 510 539
PPR PPR repeat 3.8E-07 20 25.00 515 540
Vps39_1 Vacuolar sorting protein 39 domain 1 0.032 4 21.40 515 540
PPR_1 PPR repeat 0.0026 7 23.80 541 568
PPR_2 PPR repeat family 1.4E-11 34 30.00 541 584
PPR PPR repeat 1.9E-10 30 25.00 543 573
PPR_3 Pentatricopeptide repeat domain 0.0012 8 25.00 608 651
PPR_2 PPR repeat family 8.1E-05 12 30.00 611 643
DUF1475 Protein of unknown function (DUF1475) 6.2E-07 19 21.10 612 702
PPR_1 PPR repeat 0.019 4 23.80 616 639
PPR PPR repeat 8.3E-07 19 25.00 616 641
PPR_2 PPR repeat family 3.8E-14 42 30.00 642 688
PPR_3 Pentatricopeptide repeat domain 6.2E-06 16 25.00 642 688
PPR_1 PPR repeat 9.6E-06 15 23.80 643 670
PPR PPR repeat 1.4E-11 33 25.00 644 673
PPR_long Pentacotripeptide-repeat region of PRORP 1.2E-05 14 27.00 656 741
PPR_3 Pentatricopeptide repeat domain 2.9E-07 20 25.00 664 723
PPR_1 PPR repeat 0.0013 8 23.80 674 705
PPR PPR repeat 1.5E-06 18 25.00 679 706
PPR_2 PPR repeat family 0.0029 7 30.00 683 714
PPR_1 PPR repeat 1.7E-05 14 23.80 709 740
PPR_2 PPR repeat family 0.071 3 30.00 712 740
PPR PPR repeat 0.00016 11 25.00 717 740
TPR_19 Tetratricopeptide repeat 0.0047 7 25.00 770 803
Vps39_1 Vacuolar sorting protein 39 domain 1 0.014 5 21.40 778 808
PPR PPR repeat 3.5E-06 17 25.00 781 811
PPR_2 PPR repeat family 0.00013 12 30.00 782 811
PPR_1 PPR repeat 0.11 2 23.80 782 807
PPR_3 Pentatricopeptide repeat domain 6.3E-05 12 25.00 782 811
DYW_deaminase DYW family of nucleic acid deaminases 2.1E-05 14 31.60 815 854

860

PPR_2
PPR
PPR_long
PPR_2
PPR
PPR_1
PPR_1
PPR_2
PPR
PPR_1
PPR
DUF1475
PPR_1
PPR_3
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_long
PPR_3
Vps39_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR
PPR_2
PPR_3
PPR_2
PPR_3
PPR_1
PPR
Vps39_1
TPR_19
PPR_long
PPR_3
PPR_1
PPR_2
PPR
Vps39_1
PPR_1
PPR_2
PPR
PPR_3
PPR_2
DUF1475
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_19
Vps39_1
PPR
PPR_2
PPR_1
PPR_3
DYW_deaminase

References:

DUF1475

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

TPR_19

DYW_deaminase

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.072	3	30.00	27	49
PPR	PPR repeat	0.59	0	25.00	31	48
PPR_long	Pentacotripeptide-repeat region of PRORP	0.14	1	27.00	40	183
PPR_2	PPR repeat family	0.39	0	30.00	98	119
PPR	PPR repeat	0.00018	11	25.00	99	119
PPR_1	PPR repeat	0.0028	7	23.80	99	119
PPR_1	PPR repeat	0.00042	9	23.80	132	159
PPR_2	PPR repeat family	6.7E-12	35	30.00	132	180
PPR	PPR repeat	2.9E-09	26	25.00	135	164
PPR_1	PPR repeat	9E-05	12	23.80	163	184
PPR	PPR repeat	0.23	1	25.00	170	185
DUF1475	Protein of unknown function (DUF1475)	0.0017	7	21.10	205	254
PPR_1	PPR repeat	0.1	2	23.80	209	231
PPR_3	Pentatricopeptide repeat domain	0.55	0	25.00	209	248
PPR	PPR repeat	0.0003	11	25.00	209	234
PPR_2	PPR repeat family	0.0025	7	30.00	209	234
PPR_1	PPR repeat	0.85	-1	23.80	235	247
PPR_2	PPR repeat family	0.00037	10	30.00	236	281
PPR	PPR repeat	0.0081	6	25.00	238	262
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0028	6	27.00	256	434
PPR_3	Pentatricopeptide repeat domain	0.0077	6	25.00	296	337
Vps39_1	Vacuolar sorting protein 39 domain 1	0.65	0	21.40	305	362
PPR	PPR repeat	4.3E-06	16	25.00	309	335
PPR_2	PPR repeat family	0.0037	7	30.00	309	331
PPR_1	PPR repeat	0.01	5	23.80	311	331
PPR_2	PPR repeat family	2.7E-09	27	30.00	340	383
PPR	PPR repeat	4.4E-06	16	25.00	340	368
PPR_3	Pentatricopeptide repeat domain	0.13	2	25.00	342	383
PPR_1	PPR repeat	0.97	-1	23.80	368	382
PPR	PPR repeat	0.095	3	25.00	375	399
PPR	PPR repeat	0.00044	10	25.00	412	438
PPR_2	PPR repeat family	0.8	-1	30.00	413	437
PPR_3	Pentatricopeptide repeat domain	0.22	1	25.00	413	437
PPR_2	PPR repeat family	6.8E-12	35	30.00	437	485
PPR_3	Pentatricopeptide repeat domain	0.00059	9	25.00	438	468
PPR_1	PPR repeat	3.6E-11	32	23.80	438	466
PPR	PPR repeat	4.7E-12	35	25.00	440	468
Vps39_1	Vacuolar sorting protein 39 domain 1	0.49	0	21.40	441	472
TPR_19	Tetratricopeptide repeat	0.79	0	25.00	451	465
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0052	5	27.00	473	603
PPR_3	Pentatricopeptide repeat domain	0.034	4	25.00	503	552
PPR_1	PPR repeat	0.0027	7	23.80	506	537
PPR_2	PPR repeat family	7.8E-05	12	30.00	510	539
PPR	PPR repeat	3.8E-07	20	25.00	515	540
Vps39_1	Vacuolar sorting protein 39 domain 1	0.032	4	21.40	515	540
PPR_1	PPR repeat	0.0026	7	23.80	541	568
PPR_2	PPR repeat family	1.4E-11	34	30.00	541	584
PPR	PPR repeat	1.9E-10	30	25.00	543	573
PPR_3	Pentatricopeptide repeat domain	0.0012	8	25.00	608	651
PPR_2	PPR repeat family	8.1E-05	12	30.00	611	643
DUF1475	Protein of unknown function (DUF1475)	6.2E-07	19	21.10	612	702
PPR_1	PPR repeat	0.019	4	23.80	616	639
PPR	PPR repeat	8.3E-07	19	25.00	616	641
PPR_2	PPR repeat family	3.8E-14	42	30.00	642	688
PPR_3	Pentatricopeptide repeat domain	6.2E-06	16	25.00	642	688
PPR_1	PPR repeat	9.6E-06	15	23.80	643	670
PPR	PPR repeat	1.4E-11	33	25.00	644	673
PPR_long	Pentacotripeptide-repeat region of PRORP	1.2E-05	14	27.00	656	741
PPR_3	Pentatricopeptide repeat domain	2.9E-07	20	25.00	664	723
PPR_1	PPR repeat	0.0013	8	23.80	674	705
PPR	PPR repeat	1.5E-06	18	25.00	679	706
PPR_2	PPR repeat family	0.0029	7	30.00	683	714
PPR_1	PPR repeat	1.7E-05	14	23.80	709	740
PPR_2	PPR repeat family	0.071	3	30.00	712	740
PPR	PPR repeat	0.00016	11	25.00	717	740
TPR_19	Tetratricopeptide repeat	0.0047	7	25.00	770	803
Vps39_1	Vacuolar sorting protein 39 domain 1	0.014	5	21.40	778	808
PPR	PPR repeat	3.5E-06	17	25.00	781	811
PPR_2	PPR repeat family	0.00013	12	30.00	782	811
PPR_1	PPR repeat	0.11	2	23.80	782	807
PPR_3	Pentatricopeptide repeat domain	6.3E-05	12	25.00	782	811
DYW_deaminase	DYW family of nucleic acid deaminases	2.1E-05	14	31.60	815	854