c2pfam

AT2G41110.1 :

Domain Description Evalue Bits GA Start End
DUF5663 Protein of unknown function (DUF5663) 0.0027 9 23.70 1 17
EF-hand_4 Cytoskeletal-regulatory complex EF hand 9.8E-05 13 21.30 4 73
EF-hand_7 EF-hand domain pair 3E-18 57 30.00 12 73
EF-hand_1 EF hand 3.6E-12 36 25.40 12 40
EF-hand_6 EF-hand domain 1.9E-11 34 25.00 12 41
EF-hand_8 EF-hand domain pair 0.0025 8 28.00 12 32
EF-hand_5 EF hand 1.9E-07 21 25.90 14 37
Caleosin Caleosin related protein 0.0004 11 20.60 15 47
EF-hand_9 EF-hand domain 9.1E-12 36 37.00 16 75
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 8.7E-05 14 21.40 16 70
EF-hand_11 EF-hand domain 0.074 5 21.70 17 75
MotA_activ Transcription factor MotA, activation domain 0.26 2 26.10 19 36
RTX_C RTX C-terminal domain 0.79 1 25.10 19 40
Dockerin_1 Dockerin type I repeat 0.73 1 20.50 20 40
Dockerin_1 Dockerin type I repeat 0.025 6 20.50 21 70
Fe_hyd_lg_C Iron only hydrogenase large subunit, C-terminal domain 0.00014 12 21.70 22 124
SurA_N_3 SurA N-terminal domain 0.041 4 27.20 24 89
TerB Tellurite resistance protein TerB 0.0095 7 22.80 25 90
EF-hand_8 EF-hand domain pair 8.3E-15 45 28.00 25 75
SurA_N_2 SurA N-terminal domain 0.027 5 28.50 27 58
RNA_pol_Rpb4 RNA polymerase Rpb4 0.0015 10 21.60 27 57
UPF0154 Uncharacterised protein family (UPF0154) 0.00013 13 20.90 28 56
DUF1296 Protein of unknown function (DUF1296) 0.096 4 21.60 42 64
Caleosin Caleosin related protein 0.72 1 20.60 47 81
DUF5132 Protein of unknown function (DUF5132) 0.021 6 25.00 48 58
EF-hand_1 EF hand 3.1E-11 33 25.40 48 75
EF-hand_6 EF-hand domain 1.9E-05 15 25.00 49 74
EF-hand_5 EF hand 1.3E-07 22 25.90 49 73
Poly_export Polysaccharide biosynthesis/export protein 0.0017 9 20.60 54 92
DUF5580 Family of unknown function (DUF5580) 2.7E-06 17 83.40 57 146
SurA_N_3 SurA N-terminal domain 0.00034 11 27.20 71 147
EFhand_Ca_insen Ca2+ insensitive EF hand 5E-07 21 20.80 79 148
EF-hand_8 EF-hand domain pair 0.00021 12 28.00 82 105
Dockerin_1 Dockerin type I repeat 0.3 2 20.50 82 111
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 1.7E-06 19 21.40 82 144
EF-hand_7 EF-hand domain pair 6.3E-22 69 30.00 83 146
EF-hand_4 Cytoskeletal-regulatory complex EF hand 4.9E-08 24 21.30 85 146
EF-hand_11 EF-hand domain 3.8E-07 22 21.70 85 144
EF-hand_6 EF-hand domain 5.8E-11 32 25.00 85 114
EF-hand_1 EF hand 2.7E-12 36 25.40 85 112
RTX_C RTX C-terminal domain 0.00033 12 25.10 85 146
Caleosin Caleosin related protein 0.022 5 20.60 86 114
EF-hand_5 EF hand 4.6E-09 26 25.90 86 110
EF-hand_9 EF-hand domain 7.1E-09 27 37.00 89 148
SurA_N_2 SurA N-terminal domain 0.00051 11 28.50 90 144
Dockerin_1 Dockerin type I repeat 3.7E-05 15 20.50 94 139
EF-hand_8 EF-hand domain pair 9.3E-17 51 28.00 97 146
MotA_activ Transcription factor MotA, activation domain 3.3E-05 15 26.10 97 137
DUF5132 Protein of unknown function (DUF5132) 0.03 5 25.00 98 119
UPF0154 Uncharacterised protein family (UPF0154) 0.017 6 20.90 98 127
TerB Tellurite resistance protein TerB 0.0071 7 22.80 101 148
RNA_pol_Rpb4 RNA polymerase Rpb4 0.00093 10 21.60 102 128
DUF5663 Protein of unknown function (DUF5663) 0.61 2 23.70 109 109
DUF5663 Protein of unknown function (DUF5663) 0.26 3 23.70 111 132
DUF1296 Protein of unknown function (DUF1296) 0.0064 7 21.60 115 134
EF-hand_1 EF hand 5.7E-13 39 25.40 121 148
EF-hand_6 EF-hand domain 4.3E-06 17 25.00 124 147
EF-hand_5 EF hand 8.1E-08 22 25.90 124 146
Poly_export Polysaccharide biosynthesis/export protein 0.16 3 20.60 125 141

149

DUF5663
EF-hand_4
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_5
Caleosin
EF-hand_9
SPARC_Ca_bdg
EF-hand_11
MotA_activ
RTX_C
Dockerin_1
Dockerin_1
Fe_hyd_lg_C
SurA_N_3
TerB
EF-hand_8
SurA_N_2
RNA_pol_Rpb4
UPF0154
DUF1296
Caleosin
DUF5132
EF-hand_1
EF-hand_6
EF-hand_5
Poly_export
DUF5580
SurA_N_3
EFhand_Ca_insen
EF-hand_8
Dockerin_1
SPARC_Ca_bdg
EF-hand_7
EF-hand_4
EF-hand_11
EF-hand_6
EF-hand_1
RTX_C
Caleosin
EF-hand_5
EF-hand_9
SurA_N_2
Dockerin_1
EF-hand_8
MotA_activ
DUF5132
UPF0154
TerB
RNA_pol_Rpb4
DUF5663
DUF5663
DUF1296
EF-hand_1
EF-hand_6
EF-hand_5
Poly_export

References:

DUF5580

TerB
3049247 The nucleotide sequence of a plasmid determinant for resistance to tellurium anions. Gene 1988;66:245-258.
10069007 In vivo and in vitro cloning and phenotype characterization of tellurite resistance determinant conferred by plasmid pTE53 of a clinical isolate of Escherichia coli. Folia Microbiol (Praha) 1998;43:589-599.

EF-hand_9

SPARC_Ca_bdg
16121393 The C-terminal Ca2+-binding domain of SPARC confers anti-spreading activity to human urothelial cells. J Cell Physiol. 2006;206:211-220.

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_4

DUF5132

SurA_N_3

SurA_N_2

EF-hand_11

EF-hand_1

EF-hand_8

MotA_activ
9155025 The activation domain of the MotA transcription factor from bacteriophage T4. EMBO J. 1997;16:1992-2003.

Caleosin
11171180 New insights into the mechanisms of lipid-body biogenesis in plants and other organisms. Biochem Soc Trans 2000;28:710-711.

Dockerin_1
10390637 The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides [In Process Citation] Trends Microbiol 1999;7:275-281.
10898940 Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy. Arch Biochem Biophys 2000;379:237-244.

EFhand_Ca_insen
11573089 Ca2+-independent binding of an EF-hand domain to a novel motif in the alpha-actinin-titin complex. Nat Struct Biol. 2001;8:853-857.

UPF0154

DUF5663

RNA_pol_Rpb4
11741548 Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex. Mol Cell 2001;8:1137-1143.
12482973 An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP. Mol Cell Biol. 2003;23:195-205.
8065349 C25, an essential RNA polymerase III subunit related to the RNA polymerase II subunit RPB7. Mol Cell Biol. 1994;14:6164-6170.
12482973 An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP. Mol Cell Biol. 2003;23:195-205.
16818233 Structural biology of RNA polymerase III: subcomplex C17/25 X-ray structure and 11 subunit enzyme model. Mol Cell. 2006;23:71-81.

RTX_C
8800842 Biological effects of RTX toxins: the possible role of lipopolysaccharide. Trends Microbiol 1995;3:480-483.

Fe_hyd_lg_C
9836629 X-ray crystal structure of the Fe-only hydrogenase (CpI) from Clostridium pasteurianum to 1.8 angstrom resolution. Science 1998;282:1853-1858.

DUF1296

Poly_export
8759852 Organization of the Escherichia coli K-12 gene cluster responsible for production of the extracellular polysaccharide colanic acid. J Bacteriol 1996;178:4885-4893.

Domain	Description	Evalue	Bits	GA	Start	End
DUF5663	Protein of unknown function (DUF5663)	0.0027	9	23.70	1	17
EF-hand_4	Cytoskeletal-regulatory complex EF hand	9.8E-05	13	21.30	4	73
EF-hand_7	EF-hand domain pair	3E-18	57	30.00	12	73
EF-hand_1	EF hand	3.6E-12	36	25.40	12	40
EF-hand_6	EF-hand domain	1.9E-11	34	25.00	12	41
EF-hand_8	EF-hand domain pair	0.0025	8	28.00	12	32
EF-hand_5	EF hand	1.9E-07	21	25.90	14	37
Caleosin	Caleosin related protein	0.0004	11	20.60	15	47
EF-hand_9	EF-hand domain	9.1E-12	36	37.00	16	75
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	8.7E-05	14	21.40	16	70
EF-hand_11	EF-hand domain	0.074	5	21.70	17	75
MotA_activ	Transcription factor MotA, activation domain	0.26	2	26.10	19	36
RTX_C	RTX C-terminal domain	0.79	1	25.10	19	40
Dockerin_1	Dockerin type I repeat	0.73	1	20.50	20	40
Dockerin_1	Dockerin type I repeat	0.025	6	20.50	21	70
Fe_hyd_lg_C	Iron only hydrogenase large subunit, C-terminal domain	0.00014	12	21.70	22	124
SurA_N_3	SurA N-terminal domain	0.041	4	27.20	24	89
TerB	Tellurite resistance protein TerB	0.0095	7	22.80	25	90
EF-hand_8	EF-hand domain pair	8.3E-15	45	28.00	25	75
SurA_N_2	SurA N-terminal domain	0.027	5	28.50	27	58
RNA_pol_Rpb4	RNA polymerase Rpb4	0.0015	10	21.60	27	57
UPF0154	Uncharacterised protein family (UPF0154)	0.00013	13	20.90	28	56
DUF1296	Protein of unknown function (DUF1296)	0.096	4	21.60	42	64
Caleosin	Caleosin related protein	0.72	1	20.60	47	81
DUF5132	Protein of unknown function (DUF5132)	0.021	6	25.00	48	58
EF-hand_1	EF hand	3.1E-11	33	25.40	48	75
EF-hand_6	EF-hand domain	1.9E-05	15	25.00	49	74
EF-hand_5	EF hand	1.3E-07	22	25.90	49	73
Poly_export	Polysaccharide biosynthesis/export protein	0.0017	9	20.60	54	92
DUF5580	Family of unknown function (DUF5580)	2.7E-06	17	83.40	57	146
SurA_N_3	SurA N-terminal domain	0.00034	11	27.20	71	147
EFhand_Ca_insen	Ca2+ insensitive EF hand	5E-07	21	20.80	79	148
EF-hand_8	EF-hand domain pair	0.00021	12	28.00	82	105
Dockerin_1	Dockerin type I repeat	0.3	2	20.50	82	111
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	1.7E-06	19	21.40	82	144
EF-hand_7	EF-hand domain pair	6.3E-22	69	30.00	83	146
EF-hand_4	Cytoskeletal-regulatory complex EF hand	4.9E-08	24	21.30	85	146
EF-hand_11	EF-hand domain	3.8E-07	22	21.70	85	144
EF-hand_6	EF-hand domain	5.8E-11	32	25.00	85	114
EF-hand_1	EF hand	2.7E-12	36	25.40	85	112
RTX_C	RTX C-terminal domain	0.00033	12	25.10	85	146
Caleosin	Caleosin related protein	0.022	5	20.60	86	114
EF-hand_5	EF hand	4.6E-09	26	25.90	86	110
EF-hand_9	EF-hand domain	7.1E-09	27	37.00	89	148
SurA_N_2	SurA N-terminal domain	0.00051	11	28.50	90	144
Dockerin_1	Dockerin type I repeat	3.7E-05	15	20.50	94	139
EF-hand_8	EF-hand domain pair	9.3E-17	51	28.00	97	146
MotA_activ	Transcription factor MotA, activation domain	3.3E-05	15	26.10	97	137
DUF5132	Protein of unknown function (DUF5132)	0.03	5	25.00	98	119
UPF0154	Uncharacterised protein family (UPF0154)	0.017	6	20.90	98	127
TerB	Tellurite resistance protein TerB	0.0071	7	22.80	101	148
RNA_pol_Rpb4	RNA polymerase Rpb4	0.00093	10	21.60	102	128
DUF5663	Protein of unknown function (DUF5663)	0.61	2	23.70	109	109
DUF5663	Protein of unknown function (DUF5663)	0.26	3	23.70	111	132
DUF1296	Protein of unknown function (DUF1296)	0.0064	7	21.60	115	134
EF-hand_1	EF hand	5.7E-13	39	25.40	121	148
EF-hand_6	EF-hand domain	4.3E-06	17	25.00	124	147
EF-hand_5	EF hand	8.1E-08	22	25.90	124	146
Poly_export	Polysaccharide biosynthesis/export protein	0.16	3	20.60	125	141