c2pfam

AT2G41720.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.021 5 30.00 113 134
PPR PPR repeat 0.29 2 25.00 113 131
PPR_long Pentacotripeptide-repeat region of PRORP 1.7E-07 21 27.00 122 226
Clathrin Region in Clathrin and VPS 0.55 0 23.60 137 162
Mtf2 Mtf2 family 0.56 0 27.00 143 183
PPR PPR repeat 9.9E-08 22 25.00 145 174
PPR_2 PPR repeat family 6.2E-13 39 30.00 145 188
PPR_3 Pentatricopeptide repeat domain 0.00021 12 25.00 146 189
PPR_1 PPR repeat 0.001 9 23.80 146 169
PPR_3 Pentatricopeptide repeat domain 1.1E-10 32 25.00 166 224
PPR_1 PPR repeat 4.2E-09 26 23.80 173 204
TPR_14 Tetratricopeptide repeat 0.061 5 23.50 179 208
PPR_2 PPR repeat family 4.2E-12 36 30.00 180 223
PPR PPR repeat 4.9E-07 20 25.00 180 206
PPR_long Pentacotripeptide-repeat region of PRORP 7E-11 32 27.00 198 311
PPR_3 Pentatricopeptide repeat domain 1.9E-12 37 25.00 200 258
PPR_1 PPR repeat 3.5E-07 20 23.80 210 240
PPR_2 PPR repeat family 9E-13 39 30.00 213 258
PPR PPR repeat 8.1E-11 32 25.00 214 244
TPR_12 Tetratricopeptide repeat 0.072 4 30.10 214 238
TPR_10 Tetratricopeptide repeat 0.18 2 27.50 214 236
TPR_7 Tetratricopeptide repeat 0.00083 10 27.90 215 238
TPR_1 Tetratricopeptide repeat 0.00036 11 20.40 215 238
Clathrin Region in Clathrin and VPS 0.56 0 23.60 216 250
TPR_19 Tetratricopeptide repeat 0.51 1 25.00 217 240
Mtf2 Mtf2 family 0.0083 6 27.00 226 263
SRP_TPR_like Putative TPR-like repeat 0.063 4 35.00 228 278
PPR_3 Pentatricopeptide repeat domain 3.9E-11 33 25.00 235 291
PPR_1 PPR repeat 0.0079 6 23.80 243 258
PPR_2 PPR repeat family 7.1E-11 33 30.00 246 294
PPR PPR repeat 6.2E-06 17 25.00 249 277
TPR_6 Tetratricopeptide repeat 0.49 2 26.30 256 272
TPR_1 Tetratricopeptide repeat 0.27 2 20.40 257 272
TPR_7 Tetratricopeptide repeat 0.083 4 27.90 257 273
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.024 5 27.20 262 317
TPR_19 Tetratricopeptide repeat 0.059 4 25.00 263 315
PPR_long Pentacotripeptide-repeat region of PRORP 8.1E-14 42 27.00 265 422
PPR_1 PPR repeat 7.2E-07 19 23.80 279 310
PPR_2 PPR repeat family 6.2E-09 26 30.00 281 313
PPR PPR repeat 7.7E-08 23 25.00 285 312
TPR_1 Tetratricopeptide repeat 0.11 3 20.40 291 307
TPR_6 Tetratricopeptide repeat 0.18 3 26.30 291 310
PPR_3 Pentatricopeptide repeat domain 1.9E-14 44 25.00 313 365
PPR_1 PPR repeat 0.00014 12 23.80 315 346
PPR_2 PPR repeat family 1.4E-09 28 30.00 318 358
PPR PPR repeat 4E-06 17 25.00 321 351
PPR_1 PPR repeat 0.00021 11 23.80 350 377
PPR_2 PPR repeat family 2.4E-13 40 30.00 353 400
PPR PPR repeat 1.7E-07 22 25.00 356 386
PPR_3 Pentatricopeptide repeat domain 5.3E-17 52 25.00 376 438
PPR_1 PPR repeat 1.3E-06 18 23.80 384 416
PPR_2 PPR repeat family 1.5E-13 41 30.00 388 433
PPR PPR repeat 3.9E-08 24 25.00 391 419
PPR_1 PPR repeat 2.6E-13 40 23.80 422 452
PPR_2 PPR repeat family 3.4E-16 50 30.00 423 471
PPR PPR repeat 4E-12 36 25.00 426 456
Clathrin Region in Clathrin and VPS 0.52 0 23.60 427 484
TPR_14 Tetratricopeptide repeat 0.24 3 23.50 429 468
PPR_long Pentacotripeptide-repeat region of PRORP 6.8E-08 22 27.00 440 544
DUF1884 Domain of unknown function (DUF1884) 0.54 1 28.60 446 464
PPR_3 Pentatricopeptide repeat domain 1E-06 19 25.00 447 482
PPR_1 PPR repeat 0.12 2 23.80 454 467
PPR_3 Pentatricopeptide repeat domain 6.9E-07 20 25.00 482 538
PPR_1 PPR repeat 0.015 5 23.80 489 522
PPR_2 PPR repeat family 1E-14 45 30.00 494 542
Mtf2 Mtf2 family 0.12 2 27.00 495 536
PPR PPR repeat 2.9E-05 15 25.00 497 525
TPR_10 Tetratricopeptide repeat 0.089 3 27.50 500 519
TPR_6 Tetratricopeptide repeat 0.37 2 26.30 504 523
TPR_14 Tetratricopeptide repeat 0.39 2 23.50 504 523
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.53 1 27.20 505 555
PPR_long Pentacotripeptide-repeat region of PRORP 5.1E-15 46 27.00 510 664
PPR_1 PPR repeat 2.5E-08 24 23.80 526 557
PPR PPR repeat 6.6E-08 23 25.00 531 559
PPR_2 PPR repeat family 0.00047 11 30.00 533 564
TPR_7 Tetratricopeptide repeat 0.17 3 27.90 541 555
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.051 4 27.20 541 589
TPR_12 Tetratricopeptide repeat 0.53 1 30.10 541 555
SRP_TPR_like Putative TPR-like repeat 0.003 8 35.00 542 594
TPR_1 Tetratricopeptide repeat 0.65 0 20.40 543 555
Clathrin Region in Clathrin and VPS 0.034 4 23.60 544 589
PPR_3 Pentatricopeptide repeat domain 4.1E-09 27 25.00 553 610
TPR_12 Tetratricopeptide repeat 0.16 3 30.10 564 590
PPR_1 PPR repeat 0.0001 12 23.80 567 592
PPR_2 PPR repeat family 2E-13 41 30.00 567 610
PPR PPR repeat 2.1E-09 28 25.00 567 596
TPR_1 Tetratricopeptide repeat 0.47 1 20.40 574 586
TPR_19 Tetratricopeptide repeat 0.05 4 25.00 574 590
TPR_7 Tetratricopeptide repeat 0.31 2 27.90 574 590
TPR_10 Tetratricopeptide repeat 0.052 4 27.50 574 588
TPR_6 Tetratricopeptide repeat 1 1 26.30 574 590
DUF1884 Domain of unknown function (DUF1884) 0.028 5 28.60 583 610
PPR_1 PPR repeat 8.2E-07 19 23.80 595 627
PPR_2 PPR repeat family 8E-13 39 30.00 598 645
PPR PPR repeat 1.4E-07 22 25.00 602 631
Mtf2 Mtf2 family 0.028 4 27.00 620 635
PPR_3 Pentatricopeptide repeat domain 4.6E-06 17 25.00 622 667
PPR_2 PPR repeat family 0.00098 10 30.00 633 666
PPR PPR repeat 0.00071 10 25.00 637 665
TPR_7 Tetratricopeptide repeat 0.63 1 27.90 682 694
PPR PPR repeat 5.4E-05 14 25.00 709 736
PPR_2 PPR repeat family 2E-06 18 30.00 709 749
PPR_long Pentacotripeptide-repeat region of PRORP 0.00057 9 27.00 711 778
PPR_3 Pentatricopeptide repeat domain 6.3E-06 17 25.00 728 783
PPR_2 PPR repeat family 5E-05 14 30.00 741 776

822

PPR_2
PPR
PPR_long
Clathrin
Mtf2
PPR
PPR_2
PPR_3
PPR_1
PPR_3
PPR_1
TPR_14
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_12
TPR_10
TPR_7
TPR_1
Clathrin
TPR_19
Mtf2
SRP_TPR_like
PPR_3
PPR_1
PPR_2
PPR
TPR_6
TPR_1
TPR_7
ANAPC3
TPR_19
PPR_long
PPR_1
PPR_2
PPR
TPR_1
TPR_6
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
Clathrin
TPR_14
PPR_long
DUF1884
PPR_3
PPR_1
PPR_3
PPR_1
PPR_2
Mtf2
PPR
TPR_10
TPR_6
TPR_14
ANAPC3
PPR_long
PPR_1
PPR
PPR_2
TPR_7
ANAPC3
TPR_12
SRP_TPR_like
TPR_1
Clathrin
PPR_3
TPR_12
PPR_1
PPR_2
PPR
TPR_1
TPR_19
TPR_7
TPR_10
TPR_6
DUF1884
PPR_1
PPR_2
PPR
Mtf2
PPR_3
PPR_2
PPR
TPR_7
PPR
PPR_2
PPR_long
PPR_3
PPR_2

References:

TPR_7

TPR_6

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

TPR_10

ANAPC3

Mtf2

DUF1884

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_12

SRP_TPR_like

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.021	5	30.00	113	134
PPR	PPR repeat	0.29	2	25.00	113	131
PPR_long	Pentacotripeptide-repeat region of PRORP	1.7E-07	21	27.00	122	226
Clathrin	Region in Clathrin and VPS	0.55	0	23.60	137	162
Mtf2	Mtf2 family	0.56	0	27.00	143	183
PPR	PPR repeat	9.9E-08	22	25.00	145	174
PPR_2	PPR repeat family	6.2E-13	39	30.00	145	188
PPR_3	Pentatricopeptide repeat domain	0.00021	12	25.00	146	189
PPR_1	PPR repeat	0.001	9	23.80	146	169
PPR_3	Pentatricopeptide repeat domain	1.1E-10	32	25.00	166	224
PPR_1	PPR repeat	4.2E-09	26	23.80	173	204
TPR_14	Tetratricopeptide repeat	0.061	5	23.50	179	208
PPR_2	PPR repeat family	4.2E-12	36	30.00	180	223
PPR	PPR repeat	4.9E-07	20	25.00	180	206
PPR_long	Pentacotripeptide-repeat region of PRORP	7E-11	32	27.00	198	311
PPR_3	Pentatricopeptide repeat domain	1.9E-12	37	25.00	200	258
PPR_1	PPR repeat	3.5E-07	20	23.80	210	240
PPR_2	PPR repeat family	9E-13	39	30.00	213	258
PPR	PPR repeat	8.1E-11	32	25.00	214	244
TPR_12	Tetratricopeptide repeat	0.072	4	30.10	214	238
TPR_10	Tetratricopeptide repeat	0.18	2	27.50	214	236
TPR_7	Tetratricopeptide repeat	0.00083	10	27.90	215	238
TPR_1	Tetratricopeptide repeat	0.00036	11	20.40	215	238
Clathrin	Region in Clathrin and VPS	0.56	0	23.60	216	250
TPR_19	Tetratricopeptide repeat	0.51	1	25.00	217	240
Mtf2	Mtf2 family	0.0083	6	27.00	226	263
SRP_TPR_like	Putative TPR-like repeat	0.063	4	35.00	228	278
PPR_3	Pentatricopeptide repeat domain	3.9E-11	33	25.00	235	291
PPR_1	PPR repeat	0.0079	6	23.80	243	258
PPR_2	PPR repeat family	7.1E-11	33	30.00	246	294
PPR	PPR repeat	6.2E-06	17	25.00	249	277
TPR_6	Tetratricopeptide repeat	0.49	2	26.30	256	272
TPR_1	Tetratricopeptide repeat	0.27	2	20.40	257	272
TPR_7	Tetratricopeptide repeat	0.083	4	27.90	257	273
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.024	5	27.20	262	317
TPR_19	Tetratricopeptide repeat	0.059	4	25.00	263	315
PPR_long	Pentacotripeptide-repeat region of PRORP	8.1E-14	42	27.00	265	422
PPR_1	PPR repeat	7.2E-07	19	23.80	279	310
PPR_2	PPR repeat family	6.2E-09	26	30.00	281	313
PPR	PPR repeat	7.7E-08	23	25.00	285	312
TPR_1	Tetratricopeptide repeat	0.11	3	20.40	291	307
TPR_6	Tetratricopeptide repeat	0.18	3	26.30	291	310
PPR_3	Pentatricopeptide repeat domain	1.9E-14	44	25.00	313	365
PPR_1	PPR repeat	0.00014	12	23.80	315	346
PPR_2	PPR repeat family	1.4E-09	28	30.00	318	358
PPR	PPR repeat	4E-06	17	25.00	321	351
PPR_1	PPR repeat	0.00021	11	23.80	350	377
PPR_2	PPR repeat family	2.4E-13	40	30.00	353	400
PPR	PPR repeat	1.7E-07	22	25.00	356	386
PPR_3	Pentatricopeptide repeat domain	5.3E-17	52	25.00	376	438
PPR_1	PPR repeat	1.3E-06	18	23.80	384	416
PPR_2	PPR repeat family	1.5E-13	41	30.00	388	433
PPR	PPR repeat	3.9E-08	24	25.00	391	419
PPR_1	PPR repeat	2.6E-13	40	23.80	422	452
PPR_2	PPR repeat family	3.4E-16	50	30.00	423	471
PPR	PPR repeat	4E-12	36	25.00	426	456
Clathrin	Region in Clathrin and VPS	0.52	0	23.60	427	484
TPR_14	Tetratricopeptide repeat	0.24	3	23.50	429	468
PPR_long	Pentacotripeptide-repeat region of PRORP	6.8E-08	22	27.00	440	544
DUF1884	Domain of unknown function (DUF1884)	0.54	1	28.60	446	464
PPR_3	Pentatricopeptide repeat domain	1E-06	19	25.00	447	482
PPR_1	PPR repeat	0.12	2	23.80	454	467
PPR_3	Pentatricopeptide repeat domain	6.9E-07	20	25.00	482	538
PPR_1	PPR repeat	0.015	5	23.80	489	522
PPR_2	PPR repeat family	1E-14	45	30.00	494	542
Mtf2	Mtf2 family	0.12	2	27.00	495	536
PPR	PPR repeat	2.9E-05	15	25.00	497	525
TPR_10	Tetratricopeptide repeat	0.089	3	27.50	500	519
TPR_6	Tetratricopeptide repeat	0.37	2	26.30	504	523
TPR_14	Tetratricopeptide repeat	0.39	2	23.50	504	523
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.53	1	27.20	505	555
PPR_long	Pentacotripeptide-repeat region of PRORP	5.1E-15	46	27.00	510	664
PPR_1	PPR repeat	2.5E-08	24	23.80	526	557
PPR	PPR repeat	6.6E-08	23	25.00	531	559
PPR_2	PPR repeat family	0.00047	11	30.00	533	564
TPR_7	Tetratricopeptide repeat	0.17	3	27.90	541	555
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.051	4	27.20	541	589
TPR_12	Tetratricopeptide repeat	0.53	1	30.10	541	555
SRP_TPR_like	Putative TPR-like repeat	0.003	8	35.00	542	594
TPR_1	Tetratricopeptide repeat	0.65	0	20.40	543	555
Clathrin	Region in Clathrin and VPS	0.034	4	23.60	544	589
PPR_3	Pentatricopeptide repeat domain	4.1E-09	27	25.00	553	610
TPR_12	Tetratricopeptide repeat	0.16	3	30.10	564	590
PPR_1	PPR repeat	0.0001	12	23.80	567	592
PPR_2	PPR repeat family	2E-13	41	30.00	567	610
PPR	PPR repeat	2.1E-09	28	25.00	567	596
TPR_1	Tetratricopeptide repeat	0.47	1	20.40	574	586
TPR_19	Tetratricopeptide repeat	0.05	4	25.00	574	590
TPR_7	Tetratricopeptide repeat	0.31	2	27.90	574	590
TPR_10	Tetratricopeptide repeat	0.052	4	27.50	574	588
TPR_6	Tetratricopeptide repeat	1	1	26.30	574	590
DUF1884	Domain of unknown function (DUF1884)	0.028	5	28.60	583	610
PPR_1	PPR repeat	8.2E-07	19	23.80	595	627
PPR_2	PPR repeat family	8E-13	39	30.00	598	645
PPR	PPR repeat	1.4E-07	22	25.00	602	631
Mtf2	Mtf2 family	0.028	4	27.00	620	635
PPR_3	Pentatricopeptide repeat domain	4.6E-06	17	25.00	622	667
PPR_2	PPR repeat family	0.00098	10	30.00	633	666
PPR	PPR repeat	0.00071	10	25.00	637	665
TPR_7	Tetratricopeptide repeat	0.63	1	27.90	682	694
PPR	PPR repeat	5.4E-05	14	25.00	709	736
PPR_2	PPR repeat family	2E-06	18	30.00	709	749
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00057	9	27.00	711	778
PPR_3	Pentatricopeptide repeat domain	6.3E-06	17	25.00	728	783
PPR_2	PPR repeat family	5E-05	14	30.00	741	776