c2pfam

AT2G41860.1 :

Domain Description Evalue Bits GA Start End
Kinase-like Kinase-like 0.0028 7 25.00 49 107
Pkinase Protein kinase domain 0 263 20.40 54 312
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 2E-30 96 23.10 55 307
RIO1 RIO1 family 8.5E-05 12 20.40 99 190
Kdo Lipopolysaccharide kinase (Kdo/WaaP) family 3.1E-08 23 20.90 127 200
Kinase-like Kinase-like 3.7E-08 23 25.00 149 300
Pkinase_fungal Fungal protein kinase 2.6E-05 13 24.10 155 229
GM_CSF Granulocyte-macrophage colony-stimulating factor 0.00032 11 20.10 331 377
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 0.019 5 21.40 340 380
EF-hand_8 EF-hand domain pair 0.018 5 28.00 343 379
EF-hand_7 EF-hand domain pair 4.4E-12 36 30.00 360 419
EF-hand_1 EF hand 3.1E-05 14 25.40 360 386
EF-hand_6 EF-hand domain 1.7E-05 15 25.00 360 388
EF-hand_5 EF hand 0.0053 7 25.90 361 380
EF-hand_9 EF-hand domain 0.024 5 37.00 363 394
EF-hand_8 EF-hand domain pair 1.8E-08 24 28.00 386 419
EF-hand_4 Cytoskeletal-regulatory complex EF hand 0.00013 12 21.30 391 423
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 0.27 2 21.40 396 417
EF-hand_1 EF hand 2.7E-06 17 25.40 397 419
EF-hand_5 EF hand 8E-05 12 25.90 399 417
EF-hand_6 EF-hand domain 0.00028 11 25.00 404 419
EF-hand_7 EF-hand domain pair 1E-16 51 30.00 430 493
EF-hand_1 EF hand 8.5E-10 28 25.40 432 457
EF-hand_6 EF-hand domain 6.2E-09 25 25.00 432 457
EF-hand_5 EF hand 9.8E-08 21 25.90 432 453
EF-hand_8 EF-hand domain pair 0.0058 7 28.00 432 456
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 6.8E-05 13 21.40 433 489
EF-hand_9 EF-hand domain 6.4E-05 13 37.00 435 493
EF-hand_8 EF-hand domain pair 3.6E-10 30 28.00 444 493
EF-hand_4 Cytoskeletal-regulatory complex EF hand 0.0047 7 21.30 465 494
EF-hand_1 EF hand 7.7E-10 28 25.40 468 494
EF-hand_5 EF hand 5.1E-08 22 25.90 475 492
EF-hand_6 EF-hand domain 5.5E-06 16 25.00 476 494

530

Kinase-like
Pkinase
PK_Tyr_Ser-Thr
RIO1
Kdo
Kinase-like
Pkinase_fungal
GM_CSF
SPARC_Ca_bdg
EF-hand_8
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_5
EF-hand_9
EF-hand_8
EF-hand_4
SPARC_Ca_bdg
EF-hand_1
EF-hand_5
EF-hand_6
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_5
EF-hand_8
SPARC_Ca_bdg
EF-hand_9
EF-hand_8
EF-hand_4
EF-hand_1
EF-hand_5
EF-hand_6

References:

Pkinase_fungal

EF-hand_9

SPARC_Ca_bdg
16121393 The C-terminal Ca2+-binding domain of SPARC confers anti-spreading activity to human urothelial cells. J Cell Physiol. 2006;206:211-220.

EF-hand_7

EF-hand_6

Kdo
11069912 Purification and characterization of WaaP from Escherichia coli, a lipopolysaccharide kinase essential for outer membrane stability. J Biol Chem 2001;276:5498-5504.
12021457 Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. Protein Sci 2002;11:1580-1584.
10531340 A Haemophilus influenzae gene that encodes a membrane bound 3-deoxy-D-manno-octulosonic acid (Kdo) kinase. Possible involvement of kdo phosphorylation in bacterial virulence. J Biol Chem 1999;274:31391-31400.

EF-hand_4

Kinase-like

EF-hand_1

EF-hand_8

RIO1
12021457 Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases. Protein Sci 2002;11:1580-1584.
12612080 Late cytoplasmic maturation of the small ribosomal subunit requires RIO proteins in Saccharomyces cerevisiae. Mol Cell Biol 2003;23:2083-2095.
12690111 Rio2p: An evolutionarily conserved, low-abundant protein kinase essential for processing of 20S Pre-rRNA in Saccharomyces cerevisiae. 0;0:0-0.
16008568 Structure and activity of the atypical serine kinase Rio1. FEBS J 2005;272:3698-3713.

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

GM_CSF

PK_Tyr_Ser-Thr

EF-hand_5

Domain	Description	Evalue	Bits	GA	Start	End
Kinase-like	Kinase-like	0.0028	7	25.00	49	107
Pkinase	Protein kinase domain	0	263	20.40	54	312
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	2E-30	96	23.10	55	307
RIO1	RIO1 family	8.5E-05	12	20.40	99	190
Kdo	Lipopolysaccharide kinase (Kdo/WaaP) family	3.1E-08	23	20.90	127	200
Kinase-like	Kinase-like	3.7E-08	23	25.00	149	300
Pkinase_fungal	Fungal protein kinase	2.6E-05	13	24.10	155	229
GM_CSF	Granulocyte-macrophage colony-stimulating factor	0.00032	11	20.10	331	377
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	0.019	5	21.40	340	380
EF-hand_8	EF-hand domain pair	0.018	5	28.00	343	379
EF-hand_7	EF-hand domain pair	4.4E-12	36	30.00	360	419
EF-hand_1	EF hand	3.1E-05	14	25.40	360	386
EF-hand_6	EF-hand domain	1.7E-05	15	25.00	360	388
EF-hand_5	EF hand	0.0053	7	25.90	361	380
EF-hand_9	EF-hand domain	0.024	5	37.00	363	394
EF-hand_8	EF-hand domain pair	1.8E-08	24	28.00	386	419
EF-hand_4	Cytoskeletal-regulatory complex EF hand	0.00013	12	21.30	391	423
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	0.27	2	21.40	396	417
EF-hand_1	EF hand	2.7E-06	17	25.40	397	419
EF-hand_5	EF hand	8E-05	12	25.90	399	417
EF-hand_6	EF-hand domain	0.00028	11	25.00	404	419
EF-hand_7	EF-hand domain pair	1E-16	51	30.00	430	493
EF-hand_1	EF hand	8.5E-10	28	25.40	432	457
EF-hand_6	EF-hand domain	6.2E-09	25	25.00	432	457
EF-hand_5	EF hand	9.8E-08	21	25.90	432	453
EF-hand_8	EF-hand domain pair	0.0058	7	28.00	432	456
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	6.8E-05	13	21.40	433	489
EF-hand_9	EF-hand domain	6.4E-05	13	37.00	435	493
EF-hand_8	EF-hand domain pair	3.6E-10	30	28.00	444	493
EF-hand_4	Cytoskeletal-regulatory complex EF hand	0.0047	7	21.30	465	494
EF-hand_1	EF hand	7.7E-10	28	25.40	468	494
EF-hand_5	EF hand	5.1E-08	22	25.90	475	492
EF-hand_6	EF-hand domain	5.5E-06	16	25.00	476	494