c2pfam

AT2G41880.1 :

Domain Description Evalue Bits GA Start End
Kelch_2 Kelch motif 0.00019 12 21.30 33 67
Kelch_1 Kelch motif 0.00023 11 20.10 35 65
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.00054 10 20.00 125 164
AAA_16 AAA ATPase domain 1.1E-06 19 32.60 133 208
AAA_7 P-loop containing dynein motor region 0.00028 11 25.80 136 163
T2SSE Type II/IV secretion system protein 0.00032 10 24.90 136 162
Guanylate_kin Guanylate kinase 0 201 20.60 137 318
RsgA_GTPase RsgA GTPase 1.5E-05 15 30.00 137 160
ABC_tran ABC transporter 8.4E-05 14 23.10 137 162
Rad17 Rad17 cell cycle checkpoint protein 7.8E-05 13 19.70 138 162
AAA_22 AAA domain 0.00027 12 27.00 138 162
dNK Deoxynucleoside kinase 0.0012 9 20.70 140 162
RNA_helicase RNA helicase 0.00015 13 21.50 140 179
AAA_29 P-loop containing region of AAA domain 0.00044 10 27.00 140 154
MMR_HSR1 GTPase of unknown function 7E-05 13 24.50 140 190
AAA_28 AAA domain 0.0019 9 27.00 140 160
AAA_18 AAA domain 2.8E-08 25 29.40 140 290
AAA_33 AAA domain 7.8E-06 17 27.00 140 282
AAA_28 AAA domain 0.03 5 27.00 243 285
T3SS_needle_E Type III secretion system, cytoplasmic E component of needle 7.9E-06 16 21.80 262 296
dNK Deoxynucleoside kinase 0.23 2 20.70 262 280

387

Kelch_2
Kelch_1
RuvB_N
AAA_16
AAA_7
T2SSE
Guanylate_kin
RsgA_GTPase
ABC_tran
Rad17
AAA_22
dNK
RNA_helicase
AAA_29
MMR_HSR1
AAA_28
AAA_18
AAA_33
AAA_28
T3SS_needle_E
dNK

References:

AAA_16

Kelch_1
8126718 Drosophila kelch motif is derived from a common enzyme fold. J Mol Biol 1994;236:1277-1282.
2002850 Novel thioether bond revealed by a 1.7 A crystal structure of galactose oxidase. Nature 1991;350:87-90.
15475350 Crystal structure of the Kelch domain of human Keap1. J Biol Chem 2004;279:54750-54758.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

RsgA_GTPase

T2SSE

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_29

AAA_7

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

AAA_33

T3SS_needle_E

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

AAA_28

AAA_18

dNK
9079672 Cloning of the cDNA and chromosome localization of the gene for human thymidine kinase 2. J Biol Chem 1997;272:8454-8458.
8692979 Cloning and expression of human deoxyguanosine kinase cDNA. Proc Natl Acad Sci U S A 1996;93:7258-7262.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

Guanylate_kin
1314905 Refined structure of the complex between guanylate kinase and its substrate GMP at 2.0 A resolution. J Mol Biol 1992;224:1127-1141.

AAA_22

Kelch_2
8126718 Drosophila kelch motif is derived from a common enzyme fold. J Mol Biol 1994;236:1277-1282.
2002850 Novel thioether bond revealed by a 1.7 A crystal structure of galactose oxidase. Nature 1991;350:87-90.
15475350 Crystal structure of the Kelch domain of human Keap1. J Biol Chem 2004;279:54750-54758.

Domain	Description	Evalue	Bits	GA	Start	End
Kelch_2	Kelch motif	0.00019	12	21.30	33	67
Kelch_1	Kelch motif	0.00023	11	20.10	35	65
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.00054	10	20.00	125	164
AAA_16	AAA ATPase domain	1.1E-06	19	32.60	133	208
AAA_7	P-loop containing dynein motor region	0.00028	11	25.80	136	163
T2SSE	Type II/IV secretion system protein	0.00032	10	24.90	136	162
Guanylate_kin	Guanylate kinase	0	201	20.60	137	318
RsgA_GTPase	RsgA GTPase	1.5E-05	15	30.00	137	160
ABC_tran	ABC transporter	8.4E-05	14	23.10	137	162
Rad17	Rad17 cell cycle checkpoint protein	7.8E-05	13	19.70	138	162
AAA_22	AAA domain	0.00027	12	27.00	138	162
dNK	Deoxynucleoside kinase	0.0012	9	20.70	140	162
RNA_helicase	RNA helicase	0.00015	13	21.50	140	179
AAA_29	P-loop containing region of AAA domain	0.00044	10	27.00	140	154
MMR_HSR1	GTPase of unknown function	7E-05	13	24.50	140	190
AAA_28	AAA domain	0.0019	9	27.00	140	160
AAA_18	AAA domain	2.8E-08	25	29.40	140	290
AAA_33	AAA domain	7.8E-06	17	27.00	140	282
AAA_28	AAA domain	0.03	5	27.00	243	285
T3SS_needle_E	Type III secretion system, cytoplasmic E component of needle	7.9E-06	16	21.80	262	296
dNK	Deoxynucleoside kinase	0.23	2	20.70	262	280