c2pfam

AT2G42350.1 :

Domain Description Evalue Bits GA Start End
DUF2417 Region of unknown function (DUF2417) 0.00041 11 25.00 4 69
Orf78 Orf78 (ac78) 0.0003 12 28.00 12 50
Tmpp129 Putative transmembrane protein precursor 0.24 1 19.10 17 55
PET117 PET assembly of cytochrome c oxidase, mitochondrial 0.0047 8 27.00 26 47
Prok-RING_1 Prokaryotic RING finger family 1 4.5E-05 14 29.10 96 128
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 7.8E-09 26 27.00 98 145
zf-RING_2 Ring finger domain 4.1E-16 50 27.30 99 142
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 4.6E-12 37 27.00 99 141
zf-RING_11 RING-like zinc finger 6.4E-12 36 27.00 99 128
zf-RING_5 zinc-RING finger domain 4E-10 30 27.90 99 143
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 7.1E-08 23 27.30 99 140
FANCL_C FANCL C-terminal domain 0.0018 9 20.70 99 137
zf-RING_UBOX RING-type zinc-finger 3.3E-08 24 25.20 100 139
zf-RING_6 zf-RING of BARD1-type protein 8.7E-05 13 35.00 100 145
zf-RING_4 RING/Ubox like zinc-binding domain 9.3E-06 16 27.00 100 144
PHD PHD-finger 0.0001 13 27.90 100 142
zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.00022 12 30.00 100 141
RINGv RING-variant domain 0.00018 13 21.60 100 141
zf-RING_10 zinc RING finger of MSL2 0.00021 12 31.00 100 143
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 6.5E-10 30 21.00 100 141
zf-rbx1 RING-H2 zinc finger domain 5.5E-12 37 31.00 108 142
Prok-RING_4 Prokaryotic RING finger family 4 1E-05 16 27.00 108 148
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 2.6E-08 25 21.40 112 144
zf-RING-like RING-like domain 4.5E-05 15 21.60 118 141
zinc_ribbon_16 Zinc-ribbon like family 0.00057 11 27.00 118 145
zf-C3H2C3 Zinc-finger 0.0023 9 27.00 119 141
Tmpp129 Putative transmembrane protein precursor 0.00091 9 19.10 128 143
Prok-RING_1 Prokaryotic RING finger family 1 0.13 3 29.10 135 144

217

DUF2417
Orf78
Tmpp129
PET117
Prok-RING_1
zf-C3HC4_3
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-RING_5
Zn_ribbon_17
FANCL_C
zf-RING_UBOX
zf-RING_6
zf-RING_4
PHD
zf-C3HC4_4
RINGv
zf-RING_10
zf-C3HC4
zf-rbx1
Prok-RING_4
zf-ANAPC11
zf-RING-like
zinc_ribbon_16
zf-C3H2C3
Tmpp129
Prok-RING_1

References:

RINGv

zf-C3HC4_4

Prok-RING_4

Prok-RING_1

zf-C3HC4_3

zf-C3HC4_2

zinc_ribbon_16

zf-C3H2C3

Tmpp129

zf-ANAPC11

Orf78

zf-RING-like

zf-RING_UBOX

zf-RING_6

zf-RING_5

zf-RING_4

zf-RING_2

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

zf-RING_11

zf-RING_10

zf-rbx1

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

DUF2417

Zn_ribbon_17

PET117

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Domain	Description	Evalue	Bits	GA	Start	End
DUF2417	Region of unknown function (DUF2417)	0.00041	11	25.00	4	69
Orf78	Orf78 (ac78)	0.0003	12	28.00	12	50
Tmpp129	Putative transmembrane protein precursor	0.24	1	19.10	17	55
PET117	PET assembly of cytochrome c oxidase, mitochondrial	0.0047	8	27.00	26	47
Prok-RING_1	Prokaryotic RING finger family 1	4.5E-05	14	29.10	96	128
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	7.8E-09	26	27.00	98	145
zf-RING_2	Ring finger domain	4.1E-16	50	27.30	99	142
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	4.6E-12	37	27.00	99	141
zf-RING_11	RING-like zinc finger	6.4E-12	36	27.00	99	128
zf-RING_5	zinc-RING finger domain	4E-10	30	27.90	99	143
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	7.1E-08	23	27.30	99	140
FANCL_C	FANCL C-terminal domain	0.0018	9	20.70	99	137
zf-RING_UBOX	RING-type zinc-finger	3.3E-08	24	25.20	100	139
zf-RING_6	zf-RING of BARD1-type protein	8.7E-05	13	35.00	100	145
zf-RING_4	RING/Ubox like zinc-binding domain	9.3E-06	16	27.00	100	144
PHD	PHD-finger	0.0001	13	27.90	100	142
zf-C3HC4_4	zinc finger of C3HC4-type, RING	0.00022	12	30.00	100	141
RINGv	RING-variant domain	0.00018	13	21.60	100	141
zf-RING_10	zinc RING finger of MSL2	0.00021	12	31.00	100	143
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	6.5E-10	30	21.00	100	141
zf-rbx1	RING-H2 zinc finger domain	5.5E-12	37	31.00	108	142
Prok-RING_4	Prokaryotic RING finger family 4	1E-05	16	27.00	108	148
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	2.6E-08	25	21.40	112	144
zf-RING-like	RING-like domain	4.5E-05	15	21.60	118	141
zinc_ribbon_16	Zinc-ribbon like family	0.00057	11	27.00	118	145
zf-C3H2C3	Zinc-finger	0.0023	9	27.00	119	141
Tmpp129	Putative transmembrane protein precursor	0.00091	9	19.10	128	143
Prok-RING_1	Prokaryotic RING finger family 1	0.13	3	29.10	135	144