c2pfam

AT2G42920.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 8.4E-08 21 30.00 88 136
PPR_1 PPR repeat 0.015 4 23.80 88 102
PPR PPR repeat 4.4E-08 22 25.00 91 117
PPR_long Pentacotripeptide-repeat region of PRORP 0.25 -1 27.00 94 157
PPR_3 Pentatricopeptide repeat domain 0.057 3 25.00 120 137
PPR PPR repeat 0.011 5 25.00 131 157
PPR_2 PPR repeat family 0.00048 9 30.00 160 187
PPR PPR repeat 4.3E-05 13 25.00 165 190
PPR_3 Pentatricopeptide repeat domain 0.027 4 25.00 188 220
PPR_1 PPR repeat 5.8E-11 31 23.80 191 218
PPR_2 PPR repeat family 1.4E-10 30 30.00 191 222
PPR PPR repeat 3.5E-11 32 25.00 193 222
BTAD Bacterial transcriptional activator domain 0.002 8 21.00 207 251
PPR_3 Pentatricopeptide repeat domain 1.5E-07 20 25.00 221 268
PPR_1 PPR repeat 4.3E-10 28 23.80 222 250
PPR_2 PPR repeat family 1.4E-17 53 30.00 222 269
PPR PPR repeat 3.5E-14 41 25.00 224 254
PPR_long Pentacotripeptide-repeat region of PRORP 0.00026 9 27.00 226 307
TPR_14 Tetratricopeptide repeat 0.0039 7 23.50 230 256
PPR_3 Pentatricopeptide repeat domain 2.2E-06 17 25.00 245 293
PPR PPR repeat 0.44 0 25.00 260 287
PPR_3 Pentatricopeptide repeat domain 0.42 0 25.00 284 316
PPR_1 PPR repeat 4.4E-05 12 23.80 290 317
PPR_2 PPR repeat family 0.0001 12 30.00 292 317
PPR PPR repeat 3.6E-07 19 25.00 296 318
BTAD Bacterial transcriptional activator domain 0.48 0 21.00 296 319
PPR_1 PPR repeat 0.0034 6 23.80 326 350
PPR PPR repeat 4.9E-09 25 25.00 326 355
PPR_2 PPR repeat family 7.1E-11 31 30.00 326 370
PPR_long Pentacotripeptide-repeat region of PRORP 0.0011 7 27.00 342 414
PPR_3 Pentatricopeptide repeat domain 2.6E-11 33 25.00 346 407
PPR_1 PPR repeat 0.0025 7 23.80 354 386
PPR PPR repeat 1.8E-05 14 25.00 361 388
PPR_2 PPR repeat family 2.5E-05 14 30.00 365 405
PPR_1 PPR repeat 0.00022 10 23.80 391 421
PPR_2 PPR repeat family 0.011 5 30.00 393 421
PPR PPR repeat 1.5E-05 14 25.00 397 422
BTAD Bacterial transcriptional activator domain 0.2 1 21.00 410 446
PPR_3 Pentatricopeptide repeat domain 0.059 3 25.00 423 455
PPR_1 PPR repeat 0.52 -1 23.80 426 446
PPR_2 PPR repeat family 0.01 5 30.00 426 448
PPR PPR repeat 0.00014 11 25.00 428 448
PPR PPR repeat 0.0015 8 25.00 466 490
PPR_2 PPR repeat family 0.87 -1 30.00 469 491

559

PPR_2
PPR_1
PPR
PPR_long
PPR_3
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
BTAD
PPR_3
PPR_1
PPR_2
PPR
PPR_long
TPR_14
PPR_3
PPR
PPR_3
PPR_1
PPR_2
PPR
BTAD
PPR_1
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
BTAD
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR_2

References:

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	8.4E-08	21	30.00	88	136
PPR_1	PPR repeat	0.015	4	23.80	88	102
PPR	PPR repeat	4.4E-08	22	25.00	91	117
PPR_long	Pentacotripeptide-repeat region of PRORP	0.25	-1	27.00	94	157
PPR_3	Pentatricopeptide repeat domain	0.057	3	25.00	120	137
PPR	PPR repeat	0.011	5	25.00	131	157
PPR_2	PPR repeat family	0.00048	9	30.00	160	187
PPR	PPR repeat	4.3E-05	13	25.00	165	190
PPR_3	Pentatricopeptide repeat domain	0.027	4	25.00	188	220
PPR_1	PPR repeat	5.8E-11	31	23.80	191	218
PPR_2	PPR repeat family	1.4E-10	30	30.00	191	222
PPR	PPR repeat	3.5E-11	32	25.00	193	222
BTAD	Bacterial transcriptional activator domain	0.002	8	21.00	207	251
PPR_3	Pentatricopeptide repeat domain	1.5E-07	20	25.00	221	268
PPR_1	PPR repeat	4.3E-10	28	23.80	222	250
PPR_2	PPR repeat family	1.4E-17	53	30.00	222	269
PPR	PPR repeat	3.5E-14	41	25.00	224	254
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00026	9	27.00	226	307
TPR_14	Tetratricopeptide repeat	0.0039	7	23.50	230	256
PPR_3	Pentatricopeptide repeat domain	2.2E-06	17	25.00	245	293
PPR	PPR repeat	0.44	0	25.00	260	287
PPR_3	Pentatricopeptide repeat domain	0.42	0	25.00	284	316
PPR_1	PPR repeat	4.4E-05	12	23.80	290	317
PPR_2	PPR repeat family	0.0001	12	30.00	292	317
PPR	PPR repeat	3.6E-07	19	25.00	296	318
BTAD	Bacterial transcriptional activator domain	0.48	0	21.00	296	319
PPR_1	PPR repeat	0.0034	6	23.80	326	350
PPR	PPR repeat	4.9E-09	25	25.00	326	355
PPR_2	PPR repeat family	7.1E-11	31	30.00	326	370
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0011	7	27.00	342	414
PPR_3	Pentatricopeptide repeat domain	2.6E-11	33	25.00	346	407
PPR_1	PPR repeat	0.0025	7	23.80	354	386
PPR	PPR repeat	1.8E-05	14	25.00	361	388
PPR_2	PPR repeat family	2.5E-05	14	30.00	365	405
PPR_1	PPR repeat	0.00022	10	23.80	391	421
PPR_2	PPR repeat family	0.011	5	30.00	393	421
PPR	PPR repeat	1.5E-05	14	25.00	397	422
BTAD	Bacterial transcriptional activator domain	0.2	1	21.00	410	446
PPR_3	Pentatricopeptide repeat domain	0.059	3	25.00	423	455
PPR_1	PPR repeat	0.52	-1	23.80	426	446
PPR_2	PPR repeat family	0.01	5	30.00	426	448
PPR	PPR repeat	0.00014	11	25.00	428	448
PPR	PPR repeat	0.0015	8	25.00	466	490
PPR_2	PPR repeat family	0.87	-1	30.00	469	491