c2pfam

AT2G43280.1 :

Domain Description Evalue Bits GA Start End
FAR1 FAR1 DNA-binding domain 5.5E-32 100 21.30 37 125
LPD5 Large polyvalent protein-associated domain 5 3.2E-05 14 27.00 69 152
DUF4455 Domain of unknown function (DUF4455) 4.1E-08 21 30.40 129 193
Exonuc_VII_L Exonuclease VII, large subunit 5.6E-05 12 21.70 130 192
HMMR_N Hyaluronan mediated motility receptor N-terminal 2.1E-05 13 30.10 131 204
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.0016 8 35.00 131 196
DUF2462 Protein of unknown function (DUF2462) 0.00015 12 21.80 139 187
CSF-1 Macrophage colony stimulating factor-1 (CSF-1) 8.6E-05 12 25.00 140 191
DUF148 Domain of unknown function DUF148 0.00029 10 23.50 158 191
LPD5 Large polyvalent protein-associated domain 5 0.38 1 27.00 175 196

206

FAR1
LPD5
DUF4455
Exonuc_VII_L
HMMR_N
TMF_DNA_bd
DUF2462
CSF-1
DUF148
LPD5

References:

DUF4455

LPD5

FAR1
10444599 The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling. Genes Dev 1999;13:2017-2027.

TMF_DNA_bd
9742951 Tyrosine phosphorylation of the TATA element modulatory factor by the FER nuclear tyrosine kinases. FEBS Lett. 1998;434:339-345.
1409643 Cloning and chromosomal mapping of a human immunodeficiency virus 1 "TATA" element modulatory factor. Proc Natl Acad Sci U S A. 1992;89:9372-9376.
15128430 TMF is a golgin that binds Rab6 and influences Golgi morphology. BMC Cell Biol. 2004;5:18.
18182439 Localization and domain characterization of Arabidopsis golgin candidates. J Exp Bot. 2007;58:4373-4386.

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

DUF148

DUF2462
15635413 Nucleolar proteome dynamics. Nature. 2005;433:77-83.

CSF-1
11897698 Colony-stimulating factor 1 regulation of neuroendocrine pathways that control gonadal function in mice. Endocrinology 2002;143:1413-1422.
12379742 The osteopetrotic mutation toothless (tl) is a loss-of-function frameshift mutation in the rat Csf1 gene: Evidence of a crucial role for CSF-1 in osteoclastogenesis and endochondral ossification. Proc Natl Acad Sci U S A 2002;99:14303-14308.

HMMR_N

Domain	Description	Evalue	Bits	GA	Start	End
FAR1	FAR1 DNA-binding domain	5.5E-32	100	21.30	37	125
LPD5	Large polyvalent protein-associated domain 5	3.2E-05	14	27.00	69	152
DUF4455	Domain of unknown function (DUF4455)	4.1E-08	21	30.40	129	193
Exonuc_VII_L	Exonuclease VII, large subunit	5.6E-05	12	21.70	130	192
HMMR_N	Hyaluronan mediated motility receptor N-terminal	2.1E-05	13	30.10	131	204
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.0016	8	35.00	131	196
DUF2462	Protein of unknown function (DUF2462)	0.00015	12	21.80	139	187
CSF-1	Macrophage colony stimulating factor-1 (CSF-1)	8.6E-05	12	25.00	140	191
DUF148	Domain of unknown function DUF148	0.00029	10	23.50	158	191
LPD5	Large polyvalent protein-associated domain 5	0.38	1	27.00	175	196