c2pfam

AT2G43410.1 :

Domain Description Evalue Bits GA Start End
RRM_7 RNA recognition motif 0.044 3 27.00 17 44
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7.6E-19 57 20.70 20 84
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6.6E-05 12 27.00 22 87
RRM_3 RNA binding motif 0.045 3 21.30 25 79
RRM_occluded Occluded RNA-recognition motif 0.00026 10 30.00 29 85
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 0.22 1 27.00 38 66
RRM_7 RNA recognition motif 0.0032 7 27.00 97 121
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.3E-15 44 20.70 97 159
RRM_3 RNA binding motif 0.0014 8 21.30 99 146
RRM_occluded Occluded RNA-recognition motif 0.3 0 30.00 105 143
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.041 3 27.00 111 168
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 0.0013 8 27.00 115 146
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.4E-05 14 27.00 202 282
RRM_occluded Occluded RNA-recognition motif 7.8E-05 12 30.00 222 276
RRM_3 RNA binding motif 0.93 -1 21.30 225 263
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-09 26 20.70 226 274
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 0.012 5 27.00 232 258
SPOC SPOC domain 4.7E-21 64 21.30 393 516
DUF3724 Protein of unknown function (DUF3724) 0.00032 10 22.00 724 735

858

RRM_7
RRM_1
RRM_5
RRM_3
RRM_occluded
Nup35_RRM_2
RRM_7
RRM_1
RRM_3
RRM_occluded
RRM_5
Nup35_RRM_2
RRM_5
RRM_occluded
RRM_3
RRM_1
Nup35_RRM_2
SPOC
DUF3724

References:

RRM_7

RRM_5

Nup35_RRM_2

SPOC
12897056 A conserved structural motif reveals the essential transcriptional repression function of Spen proteins and their role in developmental signaling. Genes Dev 2003;17:1909-1920.

DUF3724

RRM_3
12842046 Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element. Structure. 2003;11:833-843.

RRM_1
8290338 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 1993;21:5803-5816.

RRM_occluded

Domain	Description	Evalue	Bits	GA	Start	End
RRM_7	RNA recognition motif	0.044	3	27.00	17	44
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	7.6E-19	57	20.70	20	84
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	6.6E-05	12	27.00	22	87
RRM_3	RNA binding motif	0.045	3	21.30	25	79
RRM_occluded	Occluded RNA-recognition motif	0.00026	10	30.00	29	85
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	0.22	1	27.00	38	66
RRM_7	RNA recognition motif	0.0032	7	27.00	97	121
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	8.3E-15	44	20.70	97	159
RRM_3	RNA binding motif	0.0014	8	21.30	99	146
RRM_occluded	Occluded RNA-recognition motif	0.3	0	30.00	105	143
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.041	3	27.00	111	168
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	0.0013	8	27.00	115	146
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1.4E-05	14	27.00	202	282
RRM_occluded	Occluded RNA-recognition motif	7.8E-05	12	30.00	222	276
RRM_3	RNA binding motif	0.93	-1	21.30	225	263
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	2.9E-09	26	20.70	226	274
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	0.012	5	27.00	232	258
SPOC	SPOC domain	4.7E-21	64	21.30	393	516
DUF3724	Protein of unknown function (DUF3724)	0.00032	10	22.00	724	735