c2pfam

AT2G43770.1 :

Domain Description Evalue Bits GA Start End
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.0038 5 29.50 40 83
WD40 WD domain, G-beta repeat 8.9E-09 25 21.00 46 80
Nbas_N Neuroblastoma-amplified sequence, N terminal 0.26 0 27.00 55 82
WD40_like WD40-like domain 0.0019 7 40.00 55 140
Frtz WD repeat-containing and planar cell polarity effector protein Fritz 0.92 -3 26.20 56 124
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 1.2E-10 31 22.90 59 139
PALB2_WD40 Partner and localizer of BRCA2 WD40 domain 0.00044 8 27.00 73 145
WD40 WD domain, G-beta repeat 3.7E-08 23 21.00 87 124
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.0081 4 29.50 89 129
Nup160 Nucleoporin Nup120/160 8E-05 11 19.20 105 133
WD40 WD domain, G-beta repeat 2.7E-07 21 21.00 129 167
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.34 1 22.90 153 189
Frtz WD repeat-containing and planar cell polarity effector protein Fritz 4.8E-05 11 26.20 170 251
Nup160 Nucleoporin Nup120/160 0.0017 6 19.20 182 219
WD40 WD domain, G-beta repeat 2.7E-06 18 21.00 183 208
WD40_like WD40-like domain 0.016 4 40.00 183 231
PALB2_WD40 Partner and localizer of BRCA2 WD40 domain 0.14 0 27.00 193 221
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0041 7 22.90 195 228
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.0021 6 29.50 213 267
WD40 WD domain, G-beta repeat 2.5E-09 27 21.00 214 250
Nbas_N Neuroblastoma-amplified sequence, N terminal 2.8E-05 13 27.00 220 253
Nup160 Nucleoporin Nup120/160 0.4 -2 19.20 222 251
PD40 WD40-like Beta Propeller Repeat 0.019 4 20.60 227 237
WD40 WD domain, G-beta repeat 4.5E-10 30 21.00 259 300
Nbas_N Neuroblastoma-amplified sequence, N terminal 0.0026 6 27.00 261 305
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 2.3E-05 14 22.90 262 316
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.0013 7 29.50 274 300
Frtz WD repeat-containing and planar cell polarity effector protein Fritz 0.03 2 26.20 275 334
PD40 WD40-like Beta Propeller Repeat 0.0071 6 20.60 279 286
WD40_like WD40-like domain 0.13 1 40.00 280 336
WD40 WD domain, G-beta repeat 5.4E-05 13 21.00 306 340

343

Ge1_WD40
WD40
Nbas_N
WD40_like
Frtz
ANAPC4_WD40
PALB2_WD40
WD40
Ge1_WD40
Nup160
WD40
ANAPC4_WD40
Frtz
Nup160
WD40
WD40_like
PALB2_WD40
ANAPC4_WD40
Ge1_WD40
WD40
Nbas_N
Nup160
PD40
WD40
Nbas_N
ANAPC4_WD40
Ge1_WD40
Frtz
PD40
WD40_like
WD40

References:

PD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

ANAPC4_WD40

Ge1_WD40

PALB2_WD40

WD40_like

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

Frtz

Nbas_N

Domain	Description	Evalue	Bits	GA	Start	End
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.0038	5	29.50	40	83
WD40	WD domain, G-beta repeat	8.9E-09	25	21.00	46	80
Nbas_N	Neuroblastoma-amplified sequence, N terminal	0.26	0	27.00	55	82
WD40_like	WD40-like domain	0.0019	7	40.00	55	140
Frtz	WD repeat-containing and planar cell polarity effector protein Fritz	0.92	-3	26.20	56	124
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	1.2E-10	31	22.90	59	139
PALB2_WD40	Partner and localizer of BRCA2 WD40 domain	0.00044	8	27.00	73	145
WD40	WD domain, G-beta repeat	3.7E-08	23	21.00	87	124
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.0081	4	29.50	89	129
Nup160	Nucleoporin Nup120/160	8E-05	11	19.20	105	133
WD40	WD domain, G-beta repeat	2.7E-07	21	21.00	129	167
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.34	1	22.90	153	189
Frtz	WD repeat-containing and planar cell polarity effector protein Fritz	4.8E-05	11	26.20	170	251
Nup160	Nucleoporin Nup120/160	0.0017	6	19.20	182	219
WD40	WD domain, G-beta repeat	2.7E-06	18	21.00	183	208
WD40_like	WD40-like domain	0.016	4	40.00	183	231
PALB2_WD40	Partner and localizer of BRCA2 WD40 domain	0.14	0	27.00	193	221
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0041	7	22.90	195	228
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.0021	6	29.50	213	267
WD40	WD domain, G-beta repeat	2.5E-09	27	21.00	214	250
Nbas_N	Neuroblastoma-amplified sequence, N terminal	2.8E-05	13	27.00	220	253
Nup160	Nucleoporin Nup120/160	0.4	-2	19.20	222	251
PD40	WD40-like Beta Propeller Repeat	0.019	4	20.60	227	237
WD40	WD domain, G-beta repeat	4.5E-10	30	21.00	259	300
Nbas_N	Neuroblastoma-amplified sequence, N terminal	0.0026	6	27.00	261	305
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	2.3E-05	14	22.90	262	316
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.0013	7	29.50	274	300
Frtz	WD repeat-containing and planar cell polarity effector protein Fritz	0.03	2	26.20	275	334
PD40	WD40-like Beta Propeller Repeat	0.0071	6	20.60	279	286
WD40_like	WD40-like domain	0.13	1	40.00	280	336
WD40	WD domain, G-beta repeat	5.4E-05	13	21.00	306	340