c2pfam

AT2G45350.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 1.1E-08 24 30.00 87 132
PPR PPR repeat 2.8E-06 16 25.00 88 117
PPR_long Pentacotripeptide-repeat region of PRORP 0.041 2 27.00 93 133
PPR PPR repeat 0.034 4 25.00 124 149
PPR PPR repeat 7.9E-05 12 25.00 160 185
PPR_2 PPR repeat family 0.0053 6 30.00 160 185
PPR_1 PPR repeat 2.2E-09 26 23.80 184 213
DUF538 Protein of unknown function, DUF538 0.11 2 25.00 185 203
PPR_3 Pentatricopeptide repeat domain 0.084 2 25.00 186 227
PPR_2 PPR repeat family 1.3E-08 24 30.00 186 213
PPR PPR repeat 8.1E-11 31 25.00 188 214
PPR_2 PPR repeat family 1E-07 21 30.00 218 251
PPR_3 Pentatricopeptide repeat domain 0.025 4 25.00 219 253
PPR_1 PPR repeat 0.0033 6 23.80 219 247
PPR PPR repeat 2.5E-05 13 25.00 221 248
PPR_2 PPR repeat family 2.9E-10 29 30.00 250 283
DUF538 Protein of unknown function, DUF538 0.0067 6 25.00 250 274
PPR_1 PPR repeat 3E-09 25 23.80 251 278
PPR_3 Pentatricopeptide repeat domain 0.25 0 25.00 251 278
PPR PPR repeat 1.8E-12 36 25.00 253 282
PPR_2 PPR repeat family 8.9E-08 21 30.00 281 312
PPR_3 Pentatricopeptide repeat domain 0.1 2 25.00 282 309
PPR_1 PPR repeat 6.1E-10 28 23.80 282 309
PPR PPR repeat 9.6E-10 27 25.00 284 312
DUF538 Protein of unknown function, DUF538 0.69 -1 25.00 311 328
PPR_2 PPR repeat family 4.2E-13 38 30.00 312 359
PPR_1 PPR repeat 6.9E-05 11 23.80 312 341
PPR_3 Pentatricopeptide repeat domain 7.7E-06 15 25.00 313 343
PPR PPR repeat 4.4E-10 28 25.00 315 343
PPR_long Pentacotripeptide-repeat region of PRORP 0.16 0 27.00 332 369
PPR PPR repeat 0.29 1 25.00 361 379
PPR PPR repeat 0.00019 11 25.00 390 414
PPR_2 PPR repeat family 0.023 4 30.00 390 416
PPR_3 Pentatricopeptide repeat domain 0.51 -1 25.00 390 416
PPR_1 PPR repeat 0.045 2 23.80 391 409
PPR_2 PPR repeat family 5E-10 28 30.00 418 462
PPR PPR repeat 2E-06 17 25.00 418 444
PPR_1 PPR repeat 0.14 1 23.80 419 439
PPR_3 Pentatricopeptide repeat domain 0.0032 6 25.00 442 492
PPR_1 PPR repeat 0.12 1 23.80 447 475
PPR_long Pentacotripeptide-repeat region of PRORP 0.0031 6 27.00 447 507
PPR PPR repeat 1.4E-05 14 25.00 453 480
PPR_2 PPR repeat family 0.033 3 30.00 457 485
PPR_1 PPR repeat 0.0051 5 23.80 489 513
PPR_2 PPR repeat family 0.0021 7 30.00 490 528
PPR PPR repeat 4.6E-05 13 25.00 490 514
PPR_2 PPR repeat family 0.76 -1 30.00 517 536
PPR PPR repeat 0.4 0 25.00 520 537
PPR PPR repeat 0.0017 8 25.00 555 584
PPR_3 Pentatricopeptide repeat domain 0.59 -1 25.00 559 585
PPR_2 PPR repeat family 0.82 -1 30.00 562 585

613

PPR_2
PPR
PPR_long
PPR
PPR
PPR_2
PPR_1
DUF538
PPR_3
PPR_2
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
DUF538
PPR_1
PPR_3
PPR
PPR_2
PPR_3
PPR_1
PPR
DUF538
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_1
PPR_long
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_2
PPR
PPR
PPR_3
PPR_2

References:

DUF538

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	1.1E-08	24	30.00	87	132
PPR	PPR repeat	2.8E-06	16	25.00	88	117
PPR_long	Pentacotripeptide-repeat region of PRORP	0.041	2	27.00	93	133
PPR	PPR repeat	0.034	4	25.00	124	149
PPR	PPR repeat	7.9E-05	12	25.00	160	185
PPR_2	PPR repeat family	0.0053	6	30.00	160	185
PPR_1	PPR repeat	2.2E-09	26	23.80	184	213
DUF538	Protein of unknown function, DUF538	0.11	2	25.00	185	203
PPR_3	Pentatricopeptide repeat domain	0.084	2	25.00	186	227
PPR_2	PPR repeat family	1.3E-08	24	30.00	186	213
PPR	PPR repeat	8.1E-11	31	25.00	188	214
PPR_2	PPR repeat family	1E-07	21	30.00	218	251
PPR_3	Pentatricopeptide repeat domain	0.025	4	25.00	219	253
PPR_1	PPR repeat	0.0033	6	23.80	219	247
PPR	PPR repeat	2.5E-05	13	25.00	221	248
PPR_2	PPR repeat family	2.9E-10	29	30.00	250	283
DUF538	Protein of unknown function, DUF538	0.0067	6	25.00	250	274
PPR_1	PPR repeat	3E-09	25	23.80	251	278
PPR_3	Pentatricopeptide repeat domain	0.25	0	25.00	251	278
PPR	PPR repeat	1.8E-12	36	25.00	253	282
PPR_2	PPR repeat family	8.9E-08	21	30.00	281	312
PPR_3	Pentatricopeptide repeat domain	0.1	2	25.00	282	309
PPR_1	PPR repeat	6.1E-10	28	23.80	282	309
PPR	PPR repeat	9.6E-10	27	25.00	284	312
DUF538	Protein of unknown function, DUF538	0.69	-1	25.00	311	328
PPR_2	PPR repeat family	4.2E-13	38	30.00	312	359
PPR_1	PPR repeat	6.9E-05	11	23.80	312	341
PPR_3	Pentatricopeptide repeat domain	7.7E-06	15	25.00	313	343
PPR	PPR repeat	4.4E-10	28	25.00	315	343
PPR_long	Pentacotripeptide-repeat region of PRORP	0.16	0	27.00	332	369
PPR	PPR repeat	0.29	1	25.00	361	379
PPR	PPR repeat	0.00019	11	25.00	390	414
PPR_2	PPR repeat family	0.023	4	30.00	390	416
PPR_3	Pentatricopeptide repeat domain	0.51	-1	25.00	390	416
PPR_1	PPR repeat	0.045	2	23.80	391	409
PPR_2	PPR repeat family	5E-10	28	30.00	418	462
PPR	PPR repeat	2E-06	17	25.00	418	444
PPR_1	PPR repeat	0.14	1	23.80	419	439
PPR_3	Pentatricopeptide repeat domain	0.0032	6	25.00	442	492
PPR_1	PPR repeat	0.12	1	23.80	447	475
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0031	6	27.00	447	507
PPR	PPR repeat	1.4E-05	14	25.00	453	480
PPR_2	PPR repeat family	0.033	3	30.00	457	485
PPR_1	PPR repeat	0.0051	5	23.80	489	513
PPR_2	PPR repeat family	0.0021	7	30.00	490	528
PPR	PPR repeat	4.6E-05	13	25.00	490	514
PPR_2	PPR repeat family	0.76	-1	30.00	517	536
PPR	PPR repeat	0.4	0	25.00	520	537
PPR	PPR repeat	0.0017	8	25.00	555	584
PPR_3	Pentatricopeptide repeat domain	0.59	-1	25.00	559	585
PPR_2	PPR repeat family	0.82	-1	30.00	562	585