c2pfam

AT2G45500.1 :

Domain Description Evalue Bits GA Start End
TipAS TipAS antibiotic-recognition domain 0.00047 11 29.90 106 168
DUF815 Protein of unknown function (DUF815) 3.2E-05 14 20.10 212 365
RuvB_N Holliday junction DNA helicase ruvB N-terminus 2.6E-08 24 20.00 234 325
AAA_25 AAA domain 0.0001 12 27.00 239 274
AAA_16 AAA ATPase domain 7.9E-06 17 32.60 251 380
AAA_22 AAA domain 3.9E-06 18 27.00 253 310
TIP49 TIP49 C-terminus 2E-06 18 23.80 253 304
TniB Bacterial TniB protein 0.00029 11 20.10 254 279
IstB_IS21 IstB-like ATP binding protein 4E-05 14 24.10 254 278
Guanylate_kin Guanylate kinase 0.00067 10 20.60 254 291
AAA_5 AAA domain (dynein-related subfamily) 9.5E-07 20 20.80 256 377
NACHT NACHT domain 0.00029 11 20.40 256 277
ABC_tran ABC transporter 0.00044 11 23.10 256 315
AAA_24 AAA domain 0.00052 10 27.00 256 288
AAA_14 AAA domain 9.2E-06 16 27.00 256 327
Mg_chelatase Magnesium chelatase, subunit ChlI 1.2E-05 15 20.30 256 274
AAA_2 AAA domain (Cdc48 subfamily) 1E-07 23 20.60 256 337
AAA ATPase family associated with various cellular activities (AAA) 0 133 20.80 256 386
RNA_helicase RNA helicase 8.3E-05 14 21.50 257 327
AAA_33 AAA domain 0.00027 12 27.00 257 292
TniB Bacterial TniB protein 0.073 3 20.10 301 340
DUF4368 Domain of unknown function (DUF4368) 0.00035 12 25.00 360 385
AAA_lid_3 AAA+ lid domain 2.8E-15 47 27.20 409 442
Vps4_C Vps4 C terminal oligomerisation domain 6.7E-07 20 21.30 455 489

491

TipAS
DUF815
RuvB_N
AAA_25
AAA_16
AAA_22
TIP49
TniB
IstB_IS21
Guanylate_kin
AAA_5
NACHT
ABC_tran
AAA_24
AAA_14
Mg_chelatase
AAA_2
AAA
RNA_helicase
AAA_33
TniB
DUF4368
AAA_lid_3
Vps4_C

References:

IstB_IS21

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Vps4_C
16704411 The beta domain is required for Vps4p oligomerization into a functionally active ATPase. FEBS J. 2006;273:2357-2373.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_lid_3

DUF815

DUF4368

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_33

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_25

AAA_24

Guanylate_kin
1314905 Refined structure of the complex between guanylate kinase and its substrate GMP at 2.0 A resolution. J Mol Biol 1992;224:1127-1141.

AAA_22

TipAS
12682015 Structural basis for antibiotic recognition by the TipA class of multidrug-resistance transcriptional regulators. EMBO J 2003;22:1824-1834.

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

Domain	Description	Evalue	Bits	GA	Start	End
TipAS	TipAS antibiotic-recognition domain	0.00047	11	29.90	106	168
DUF815	Protein of unknown function (DUF815)	3.2E-05	14	20.10	212	365
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	2.6E-08	24	20.00	234	325
AAA_25	AAA domain	0.0001	12	27.00	239	274
AAA_16	AAA ATPase domain	7.9E-06	17	32.60	251	380
AAA_22	AAA domain	3.9E-06	18	27.00	253	310
TIP49	TIP49 C-terminus	2E-06	18	23.80	253	304
TniB	Bacterial TniB protein	0.00029	11	20.10	254	279
IstB_IS21	IstB-like ATP binding protein	4E-05	14	24.10	254	278
Guanylate_kin	Guanylate kinase	0.00067	10	20.60	254	291
AAA_5	AAA domain (dynein-related subfamily)	9.5E-07	20	20.80	256	377
NACHT	NACHT domain	0.00029	11	20.40	256	277
ABC_tran	ABC transporter	0.00044	11	23.10	256	315
AAA_24	AAA domain	0.00052	10	27.00	256	288
AAA_14	AAA domain	9.2E-06	16	27.00	256	327
Mg_chelatase	Magnesium chelatase, subunit ChlI	1.2E-05	15	20.30	256	274
AAA_2	AAA domain (Cdc48 subfamily)	1E-07	23	20.60	256	337
AAA	ATPase family associated with various cellular activities (AAA)	0	133	20.80	256	386
RNA_helicase	RNA helicase	8.3E-05	14	21.50	257	327
AAA_33	AAA domain	0.00027	12	27.00	257	292
TniB	Bacterial TniB protein	0.073	3	20.10	301	340
DUF4368	Domain of unknown function (DUF4368)	0.00035	12	25.00	360	385
AAA_lid_3	AAA+ lid domain	2.8E-15	47	27.20	409	442
Vps4_C	Vps4 C terminal oligomerisation domain	6.7E-07	20	21.30	455	489