c2pfam

AT2G46270.1 :

Domain Description Evalue Bits GA Start End
MFMR G-box binding protein MFMR 1E-33 106 20.50 1 96
MFMR_assoc Disordered region downstream of MFMR 1.6E-16 52 31.10 129 235
UPF0242 Uncharacterised protein family (UPF0242) 0.00037 11 23.70 252 327
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 0.002 9 24.10 254 324
APG6_N Apg6 coiled-coil region 0.00035 12 45.00 255 320
NRBF2 Nuclear receptor-binding factor 2, autophagy regulator 0.00084 10 36.80 256 317
bZIP_1 bZIP transcription factor 3.1E-24 75 22.00 257 319
bZIP_Maf bZIP Maf transcription factor 4.6E-07 21 20.70 258 321
bZIP_2 Basic region leucine zipper 1.5E-12 38 21.30 259 309
HAP1_N HAP1 N-terminal conserved region 6.1E-06 16 25.00 259 324
ADIP Afadin- and alpha -actinin-Binding 4E-05 14 29.10 260 346
V_ATPase_I V-type ATPase 116kDa subunit family 0.0087 4 26.50 260 348
ATG16 Autophagy protein 16 (ATG16) 0.00055 11 35.00 261 326
DUF1003 Protein of unknown function (DUF1003) 0.0012 9 24.60 262 298
MAT1 CDK-activating kinase assembly factor MAT1 0.0076 7 25.00 263 358
UPF0449 Uncharacterised protein family UPF0449 0.0012 10 27.00 268 323
DivIC Septum formation initiator 0.00054 10 24.00 277 310
YabA Initiation control protein YabA 0.00063 11 30.00 284 346
HALZ Homeobox associated leucine zipper 7.2E-06 17 26.30 285 311
APC_N_CC Coiled-coil N-terminus of APC, dimerisation domain 2.8E-05 15 26.70 285 307
JIP_LZII JNK-interacting protein leucine zipper II 3.1E-05 15 30.00 286 319
bZIP_2 Basic region leucine zipper 0.81 0 21.30 307 327

382

MFMR
MFMR_assoc
UPF0242
Jnk-SapK_ap_N
APG6_N
NRBF2
bZIP_1
bZIP_Maf
bZIP_2
HAP1_N
ADIP
V_ATPase_I
ATG16
DUF1003
MAT1
UPF0449
DivIC
YabA
HALZ
APC_N_CC
JIP_LZII
bZIP_2

References:

bZIP_1

HALZ

UPF0242

ADIP
12446711 ADIP, a novel Afadin- and alpha-actinin-binding protein localized at cell-cell adherens junctions. J Biol Chem. 2003;278:4103-4111.
17486116 Gamma-tubulin complex-mediated anchoring of spindle microtubules to spindle-pole bodies requires Msd1 in fission yeast. Nat Cell Biol. 2007;9:646-653.

MFMR
8127687 Novel conserved sequence motifs in plant G-box binding proteins and implications for interactive domains. Nucleic Acids Res 1994;22:470-478.
11722549 Plant bZIP G-box binding factors. Modular structure and activation mechanisms. Eur J Biochem 2001;268:5655-5666.

DivIC
8113187 Characterization of a cell division gene from Bacillus subtilis that is required for vegetative and sporulation septum formation. J Bacteriol 1994;176:1451-1459.

NRBF2

APG6_N

V_ATPase_I
10224039 Structure and properties of the vacuolar (H+)-ATPases. J Biol Chem 1999;274:12951-12954.
10340849 Structure and properties of the clathrin-coated vesicle and yeast vacuolar V-ATPases. J Bioenerg Biomembr 1999;31:57-65.

UPF0449

APC_N_CC

JIP_LZII

ATG16
10406794 Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. EMBO J. 1999;18:3888-3896.
17012802 Expression, purification and crystallization of the Atg5-Atg16 complex essential for autophagy. Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006;62:1021-1023.

MAT1
11056162 Solution structure of the N-terminal domain of the human TFIIH MAT1 subunit: new insights into the RING finger family. J Biol Chem 2001;276:7457-7464.

HAP1_N
7477378 A huntingtin-associated protein enriched in brain with implications for pathology. Nature 1995;378:398-402.
9599014 HAP1-huntingtin interactions do not contribute to the molecular pathology in Huntington's disease transgenic mice. FEBS Lett 1998;426:229-232.
9285789 Huntingtin-associated protein 1 (HAP1) binds to a Trio-like polypeptide, with a rac1 guanine nucleotide exchange factor domain. Hum Mol Genet 1997;6:1519-1525.
11161814 Cloning and characterization of three novel genes, ALS2CR1, ALS2CR2, and ALS2CR3, in the juvenile amyotrophic lateral sclerosis (ALS2) critical region at chromosome 2q33-q34: candidate genes for ALS2. Genomics 2001;71:200-213.

YabA

MFMR_assoc

DUF1003

bZIP_Maf
11416124 Phosphorylation of mafa is essential for its transcriptional and biological properties. Mol Cell Biol 2001;21:4441-4452.

Jnk-SapK_ap_N

bZIP_2
11906833 bZIP transcription factors in Arabidopsis. Trends Plant Sci 2002;7:106-111.
12867624 bZIP proteins of human gammaherpesviruses. J Gen Virol 2003;84:1941-1949.
7780801 Transcription factors 1: bZIP proteins. Protein Profile 1995;2:101-168.

Domain	Description	Evalue	Bits	GA	Start	End
MFMR	G-box binding protein MFMR	1E-33	106	20.50	1	96
MFMR_assoc	Disordered region downstream of MFMR	1.6E-16	52	31.10	129	235
UPF0242	Uncharacterised protein family (UPF0242)	0.00037	11	23.70	252	327
Jnk-SapK_ap_N	JNK_SAPK-associated protein-1	0.002	9	24.10	254	324
APG6_N	Apg6 coiled-coil region	0.00035	12	45.00	255	320
NRBF2	Nuclear receptor-binding factor 2, autophagy regulator	0.00084	10	36.80	256	317
bZIP_1	bZIP transcription factor	3.1E-24	75	22.00	257	319
bZIP_Maf	bZIP Maf transcription factor	4.6E-07	21	20.70	258	321
bZIP_2	Basic region leucine zipper	1.5E-12	38	21.30	259	309
HAP1_N	HAP1 N-terminal conserved region	6.1E-06	16	25.00	259	324
ADIP	Afadin- and alpha -actinin-Binding	4E-05	14	29.10	260	346
V_ATPase_I	V-type ATPase 116kDa subunit family	0.0087	4	26.50	260	348
ATG16	Autophagy protein 16 (ATG16)	0.00055	11	35.00	261	326
DUF1003	Protein of unknown function (DUF1003)	0.0012	9	24.60	262	298
MAT1	CDK-activating kinase assembly factor MAT1	0.0076	7	25.00	263	358
UPF0449	Uncharacterised protein family UPF0449	0.0012	10	27.00	268	323
DivIC	Septum formation initiator	0.00054	10	24.00	277	310
YabA	Initiation control protein YabA	0.00063	11	30.00	284	346
HALZ	Homeobox associated leucine zipper	7.2E-06	17	26.30	285	311
APC_N_CC	Coiled-coil N-terminus of APC, dimerisation domain	2.8E-05	15	26.70	285	307
JIP_LZII	JNK-interacting protein leucine zipper II	3.1E-05	15	30.00	286	319
bZIP_2	Basic region leucine zipper	0.81	0	21.30	307	327