c2pfam

AT2G46610.1 :

Domain Description Evalue Bits GA Start End
RRM_7 RNA recognition motif 0.035 4 27.00 2 29
RNA_bind RNA binding domain 5.2E-05 13 23.60 3 54
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.8E-20 62 20.70 4 61
RRM_3 RNA binding motif 0.00011 12 21.30 10 58
DUF4283 Domain of unknown function (DUF4283) 0.0046 6 27.00 11 61
SET_assoc Histone lysine methyltransferase SET associated 5.4E-05 13 21.00 13 61
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.3E-05 12 27.00 16 74
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 0.0016 8 27.00 22 51
RRM_8 RRM-like domain 0.24 1 26.20 31 57
RRM_7 RNA recognition motif 0.014 5 27.00 32 59
PHM7_cyt Cytosolic domain of 10TM putative phosphate transporter 0.004 7 27.00 34 53
PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term 0.021 5 25.00 44 115
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.00063 9 27.00 92 162
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.5E-16 48 20.70 97 159
RNA_bind RNA binding domain 2E-05 14 23.60 97 153
PHM7_cyt Cytosolic domain of 10TM putative phosphate transporter 0.00085 9 27.00 105 152
SET_assoc Histone lysine methyltransferase SET associated 0.0014 8 21.00 107 156
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 1E-06 19 27.00 109 146
DUF4283 Domain of unknown function (DUF4283) 0.028 4 27.00 109 148
RRM_3 RNA binding motif 0.00024 11 21.30 110 175
RRM_8 RRM-like domain 0.00064 10 26.20 121 158
RRM_7 RNA recognition motif 0.38 1 27.00 125 151
PRP38_assoc Pre-mRNA-splicing factor 38-associated hydrophilic C-term 0.0026 8 25.00 164 242
DUF2457 Protein of unknown function (DUF2457) 0.00047 9 30.00 166 226

250

RRM_7
RNA_bind
RRM_1
RRM_3
DUF4283
SET_assoc
RRM_5
Nup35_RRM_2
RRM_8
RRM_7
PHM7_cyt
PRP38_assoc
RRM_5
RRM_1
RNA_bind
PHM7_cyt
SET_assoc
Nup35_RRM_2
DUF4283
RRM_3
RRM_8
RRM_7
PRP38_assoc
DUF2457

References:

RRM_7

RRM_5

DUF4283

Nup35_RRM_2

RRM_3
12842046 Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element. Structure. 2003;11:833-843.

RRM_1
8290338 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 1993;21:5803-5816.

PRP38_assoc

DUF2457

SET_assoc
12389037 Structure of the SET domain histone lysine methyltransferase Clr4. Nat Struct Biol 2002;0:0-0.
12575990 Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem Sci 2003;28:59-62.

PHM7_cyt

RNA_bind

RRM_8

Domain	Description	Evalue	Bits	GA	Start	End
RRM_7	RNA recognition motif	0.035	4	27.00	2	29
RNA_bind	RNA binding domain	5.2E-05	13	23.60	3	54
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	2.8E-20	62	20.70	4	61
RRM_3	RNA binding motif	0.00011	12	21.30	10	58
DUF4283	Domain of unknown function (DUF4283)	0.0046	6	27.00	11	61
SET_assoc	Histone lysine methyltransferase SET associated	5.4E-05	13	21.00	13	61
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9.3E-05	12	27.00	16	74
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	0.0016	8	27.00	22	51
RRM_8	RRM-like domain	0.24	1	26.20	31	57
RRM_7	RNA recognition motif	0.014	5	27.00	32	59
PHM7_cyt	Cytosolic domain of 10TM putative phosphate transporter	0.004	7	27.00	34	53
PRP38_assoc	Pre-mRNA-splicing factor 38-associated hydrophilic C-term	0.021	5	25.00	44	115
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.00063	9	27.00	92	162
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4.5E-16	48	20.70	97	159
RNA_bind	RNA binding domain	2E-05	14	23.60	97	153
PHM7_cyt	Cytosolic domain of 10TM putative phosphate transporter	0.00085	9	27.00	105	152
SET_assoc	Histone lysine methyltransferase SET associated	0.0014	8	21.00	107	156
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	1E-06	19	27.00	109	146
DUF4283	Domain of unknown function (DUF4283)	0.028	4	27.00	109	148
RRM_3	RNA binding motif	0.00024	11	21.30	110	175
RRM_8	RRM-like domain	0.00064	10	26.20	121	158
RRM_7	RNA recognition motif	0.38	1	27.00	125	151
PRP38_assoc	Pre-mRNA-splicing factor 38-associated hydrophilic C-term	0.0026	8	25.00	164	242
DUF2457	Protein of unknown function (DUF2457)	0.00047	9	30.00	166	226