c2pfam

AT3G01460.1 :

Domain Description Evalue Bits GA Start End
zf-HC5HC2H PHD-like zinc-binding domain 0.0031 8 29.10 77 114
C1_2 C1 domain 0.0007 10 20.40 82 113
Prok-RING_1 Prokaryotic RING finger family 1 0.0026 8 29.10 84 113
PHD PHD-finger 1.2E-11 34 27.90 86 131
PHD_2 PHD-finger 2.6E-07 20 28.00 97 131
MBD Methyl-CpG binding domain 5.7E-28 87 20.70 258 373
FYRN F/Y-rich N-terminus 7.2E-08 22 21.00 411 438
DUF1664 Protein of unknown function (DUF1664) 0.0066 7 30.00 566 620
FYRC F/Y rich C-terminus 0.15 2 20.80 571 593
FYRC F/Y rich C-terminus 1.7E-07 21 20.80 669 695
Bromodomain Bromodomain 1.5E-05 15 21.00 1179 1227
zf-HC5HC2H PHD-like zinc-binding domain 0.0017 9 29.10 1271 1317
C1_2 C1 domain 0.00041 11 20.40 1286 1316
Prok-RING_1 Prokaryotic RING finger family 1 0.00043 10 29.10 1289 1317
PHD PHD-finger 9.9E-15 44 27.90 1289 1335
PHD_2 PHD-finger 0.002 8 28.00 1301 1334
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 0.11 3 28.80 1356 1432
WHIM1 WSTF, HB1, Itc1p, MBD9 motif 1 1.5E-12 37 19.10 1372 1413
KELK KELK-motif containing domain of MRCK Ser/Thr protein kinase 0.003 8 27.00 1407 1451
DUF1664 Protein of unknown function (DUF1664) 0.23 2 30.00 1408 1448
KELK KELK-motif containing domain of MRCK Ser/Thr protein kinase 0.47 1 27.00 1577 1617
DUF1664 Protein of unknown function (DUF1664) 0.009 6 30.00 1583 1622
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 0.0033 8 28.80 1588 1620
WSD Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1.5E-09 28 25.40 1627 1726
Prok-RING_1 Prokaryotic RING finger family 1 0.22 2 29.10 1805 1817
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.00019 12 22.60 1806 1826

2176

zf-HC5HC2H
C1_2
Prok-RING_1
PHD
PHD_2
MBD
FYRN
DUF1664
FYRC
FYRC
Bromodomain
zf-HC5HC2H
C1_2
Prok-RING_1
PHD
PHD_2
HIP1_clath_bdg
WHIM1
KELK
DUF1664
KELK
DUF1664
HIP1_clath_bdg
WSD
Prok-RING_1
zf-C2H2_jaz

References:

DUF1664

Bromodomain
1350857 The bromodomain: a conserved sequence found in human, Drosophila and yeast proteins. Nucleic Acids Res 1992;20:2603-2603.
9175470 The bromodomain revisited. Trends Biochem Sci 1997;22:151-153.
10365964 Structure and ligand of a histone acetyltransferase bromodomain. Nature 1999;399:491-496.

zf-HC5HC2H

MBD
8177735 Dissection of the methyl-CpG binding domain from the chromosomal protein MeCP2. Nucleic Acids Res 1993;21:4886-4892.
10050851 A mammalian protein with specific demethylase activity for mCpG DNA. Nature 1999;397:579-583.

FYRN
7598802 The human MLL gene: nucleotide sequence, homology to the Drosophila trx zinc-finger domain, and alternative splicing. DNA Cell Biol 1995;14:475-483.

FYRC
7598802 The human MLL gene: nucleotide sequence, homology to the Drosophila trx zinc-finger domain, and alternative splicing. DNA Cell Biol 1995;14:475-483.

PHD_2

HIP1_clath_bdg

WSD

WHIM1

C1_2

zf-C2H2_jaz
10488071 JAZ requires the double-stranded RNA-binding zinc finger motifs for nuclear localization. J Biol Chem. 1999;274:27399-27406.

KELK

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
zf-HC5HC2H	PHD-like zinc-binding domain	0.0031	8	29.10	77	114
C1_2	C1 domain	0.0007	10	20.40	82	113
Prok-RING_1	Prokaryotic RING finger family 1	0.0026	8	29.10	84	113
PHD	PHD-finger	1.2E-11	34	27.90	86	131
PHD_2	PHD-finger	2.6E-07	20	28.00	97	131
MBD	Methyl-CpG binding domain	5.7E-28	87	20.70	258	373
FYRN	F/Y-rich N-terminus	7.2E-08	22	21.00	411	438
DUF1664	Protein of unknown function (DUF1664)	0.0066	7	30.00	566	620
FYRC	F/Y rich C-terminus	0.15	2	20.80	571	593
FYRC	F/Y rich C-terminus	1.7E-07	21	20.80	669	695
Bromodomain	Bromodomain	1.5E-05	15	21.00	1179	1227
zf-HC5HC2H	PHD-like zinc-binding domain	0.0017	9	29.10	1271	1317
C1_2	C1 domain	0.00041	11	20.40	1286	1316
Prok-RING_1	Prokaryotic RING finger family 1	0.00043	10	29.10	1289	1317
PHD	PHD-finger	9.9E-15	44	27.90	1289	1335
PHD_2	PHD-finger	0.002	8	28.00	1301	1334
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	0.11	3	28.80	1356	1432
WHIM1	WSTF, HB1, Itc1p, MBD9 motif 1	1.5E-12	37	19.10	1372	1413
KELK	KELK-motif containing domain of MRCK Ser/Thr protein kinase	0.003	8	27.00	1407	1451
DUF1664	Protein of unknown function (DUF1664)	0.23	2	30.00	1408	1448
KELK	KELK-motif containing domain of MRCK Ser/Thr protein kinase	0.47	1	27.00	1577	1617
DUF1664	Protein of unknown function (DUF1664)	0.009	6	30.00	1583	1622
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	0.0033	8	28.80	1588	1620
WSD	Williams-Beuren syndrome DDT (WSD), D-TOX E motif	1.5E-09	28	25.40	1627	1726
Prok-RING_1	Prokaryotic RING finger family 1	0.22	2	29.10	1805	1817
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.00019	12	22.60	1806	1826