c2pfam

AT3G01540.1 :

Domain Description Evalue Bits GA Start End
WW WW domain 1.6E-10 30 21.60 19 49
DEAD DEAD/DEAH box helicase 0 163 20.60 182 351
ResIII Type III restriction enzyme, res subunit 9.2E-09 24 20.90 196 345
Helicase_C Helicase conserved C-terminal domain 0.054 3 20.90 223 280
IKI3 IKI3 family 0.00011 9 19.30 273 316
ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 8.8E-06 14 27.00 388 496
Helicase_C Helicase conserved C-terminal domain 4.5E-36 112 20.90 389 497
DEAD DEAD/DEAH box helicase 0.002 7 20.60 396 459
ResIII Type III restriction enzyme, res subunit 0.057 2 20.90 398 441

618

WW
DEAD
ResIII
Helicase_C
IKI3
ERCC3_RAD25_C
Helicase_C
DEAD
ResIII

References:

ResIII

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

ERCC3_RAD25_C

IKI3
10024884 Elongator, a multisubunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. Mol Cell 1999;3:109-118.

Helicase_C

WW
7846762 The WW domain: a signalling site in dystrophin? Trends Biochem Sci 1994;19:531-533.
8757138 Structure of the WW domain of a kinase-associated protein complexed with a proline-rich peptide. Nature 1996;382:646-649.
11870222 Substrate proteolysis is inhibited by dominant-negative Nedd4 and Rsp5 mutants harboring alterations in WW domain 1. J Cell Sci 2002;115:1041-1048.
11323714 Solution structure of a Nedd4 WW domain-ENaC peptide complex. Nat Struct Biol 2001;8:407-412.
10932238 Converging on proline: the mechanism of WW domain peptide recognition. Nat Struct Biol 2000;7:611-613.
10744724 A novel pro-Arg motif recognized by WW domains. J Biol Chem 2000;275:10359-10369.
10037602 Function of WW domains as phosphoserine- or phosphothreonine-binding modules. Science 1999;283:1325-1328.
9407065 The WW domain of neural protein FE65 interacts with proline-rich motifs in Ermekova KS, Zambrano N, Linn H, Minopoli G, Gertler F, Russo T, Sudol M; J Biol Chem 1998;272:32869-32877.
8797792 Towards prediction of cognate complexes between the WW domain and proline-rich ligands. FEBS Lett 1996;384:1-8.
7644498 The WW domain of Yes-associated protein binds a proline-rich ligand that differs from the consensus established for Src homology 3-binding modules. Proc Natl Acad Sci U S A 1995;92:7819-7823.
7641887 Characterization of a novel protein-binding module--the WW domain. FEBS Lett 1995;369:67-71.

Domain	Description	Evalue	Bits	GA	Start	End
WW	WW domain	1.6E-10	30	21.60	19	49
DEAD	DEAD/DEAH box helicase	0	163	20.60	182	351
ResIII	Type III restriction enzyme, res subunit	9.2E-09	24	20.90	196	345
Helicase_C	Helicase conserved C-terminal domain	0.054	3	20.90	223	280
IKI3	IKI3 family	0.00011	9	19.30	273	316
ERCC3_RAD25_C	ERCC3/RAD25/XPB C-terminal helicase	8.8E-06	14	27.00	388	496
Helicase_C	Helicase conserved C-terminal domain	4.5E-36	112	20.90	389	497
DEAD	DEAD/DEAH box helicase	0.002	7	20.60	396	459
ResIII	Type III restriction enzyme, res subunit	0.057	2	20.90	398	441