c2pfam

AT3G02010.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.00027 11 30.00 52 78
TPR_16 Tetratricopeptide repeat 0.48 1 32.70 57 72
TPR_14 Tetratricopeptide repeat 0.31 2 23.50 58 73
PPR PPR repeat 0.011 6 25.00 59 77
PPR_1 PPR repeat 0.12 2 23.80 60 74
PPR_2 PPR repeat family 2.8E-09 27 30.00 77 108
PPR_3 Pentatricopeptide repeat domain 0.72 0 25.00 79 119
PPR PPR repeat 7.7E-08 22 25.00 80 108
PPR_1 PPR repeat 0.00011 12 23.80 83 105
PPR_1 PPR repeat 9.8E-08 21 23.80 109 136
PPR_2 PPR repeat family 6.7E-15 45 30.00 109 157
PPR_3 Pentatricopeptide repeat domain 0.22 1 25.00 110 154
PPR PPR repeat 1.4E-09 28 25.00 111 139
TPR_14 Tetratricopeptide repeat 0.011 7 23.50 113 147
Vps39_1 Vacuolar sorting protein 39 domain 1 0.28 1 21.40 113 141
ATP13 Mitochondrial ATPase expression 0.68 -1 26.70 114 141
PPR_long Pentacotripeptide-repeat region of PRORP 0.33 0 27.00 121 153
PPR_1 PPR repeat 0.0064 6 23.80 145 154
PPR_1 PPR repeat 0.00035 10 23.80 188 209
PPR PPR repeat 0.00014 12 25.00 188 213
PPR_2 PPR repeat family 0.00033 11 30.00 188 213
PPR_2 PPR repeat family 2.6E-14 43 30.00 213 260
PPR_1 PPR repeat 5.1E-06 16 23.80 214 242
PPR_3 Pentatricopeptide repeat domain 1.1E-05 15 25.00 214 262
Vps39_1 Vacuolar sorting protein 39 domain 1 0.6 0 21.40 214 246
PPR PPR repeat 4.8E-09 26 25.00 216 245
PPR_long Pentacotripeptide-repeat region of PRORP 0.07 2 27.00 233 270
PPR PPR repeat 0.0011 9 25.00 289 315
PPR_2 PPR repeat family 0.0085 6 30.00 289 313
PPR_1 PPR repeat 0.56 0 23.80 295 311
PPR_1 PPR repeat 0.0009 9 23.80 313 342
PPR_3 Pentatricopeptide repeat domain 0.16 2 25.00 313 343
PPR_2 PPR repeat family 5.1E-07 20 30.00 315 347
PPR PPR repeat 1.3E-08 25 25.00 317 347
PPR_long Pentacotripeptide-repeat region of PRORP 0.13 1 27.00 366 464
PPR PPR repeat 2.1E-05 14 25.00 390 412
PPR_2 PPR repeat family 0.023 5 30.00 390 411
PPR_1 PPR repeat 0.14 2 23.80 390 410
PPR_1 PPR repeat 0.0019 8 23.80 416 444
PPR_2 PPR repeat family 4.9E-11 32 30.00 416 461
Vps39_1 Vacuolar sorting protein 39 domain 1 0.0029 8 21.40 417 446
PPR PPR repeat 1.4E-08 24 25.00 418 447
PPR_3 Pentatricopeptide repeat domain 0.029 4 25.00 418 461
Vps39_1 Vacuolar sorting protein 39 domain 1 0.67 0 21.40 490 515
PPR_3 Pentatricopeptide repeat domain 0.18 2 25.00 493 513
PPR_1 PPR repeat 4.1E-06 16 23.80 493 513
PPR PPR repeat 2.9E-06 17 25.00 493 516
PPR_2 PPR repeat family 7.3E-05 13 30.00 493 517
PPR_long Pentacotripeptide-repeat region of PRORP 0.0031 6 27.00 501 598
TPR_16 Tetratricopeptide repeat 0.017 6 32.70 517 545
PPR_2 PPR repeat family 2.5E-11 33 30.00 517 563
PPR_1 PPR repeat 0.0032 7 23.80 517 544
PPR_3 Pentatricopeptide repeat domain 6.9E-05 13 25.00 517 554
PPR PPR repeat 7.2E-09 25 25.00 519 549
ATP13 Mitochondrial ATPase expression 0.0031 7 26.70 521 591
TPR_14 Tetratricopeptide repeat 0.0028 8 23.50 521 557
PPR_long Pentacotripeptide-repeat region of PRORP 0.0024 7 27.00 537 683
PPR PPR repeat 0.089 3 25.00 559 579
PPR_1 PPR repeat 1.5E-06 18 23.80 585 615
PPR PPR repeat 2.7E-06 17 25.00 592 615
PPR_2 PPR repeat family 6.4E-06 16 30.00 592 631
TPR_14 Tetratricopeptide repeat 0.15 3 23.50 592 614
TPR_16 Tetratricopeptide repeat 0.41 1 32.70 598 612
PPR_3 Pentatricopeptide repeat domain 0.023 5 25.00 613 645
PPR_2 PPR repeat family 0.039 4 30.00 656 688
PPR PPR repeat 5.8E-05 13 25.00 658 687
PPR_3 Pentatricopeptide repeat domain 0.44 0 25.00 659 688
SNAPc_SNAP43 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 0.00022 11 25.00 663 758
DYW_deaminase DYW family of nucleic acid deaminases 2.7E-38 120 31.60 693 814

825

PPR_2
TPR_16
TPR_14
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR_1
PPR_1
PPR_2
PPR_3
PPR
TPR_14
Vps39_1
ATP13
PPR_long
PPR_1
PPR_1
PPR
PPR_2
PPR_2
PPR_1
PPR_3
Vps39_1
PPR
PPR_long
PPR
PPR_2
PPR_1
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR
PPR_2
PPR_1
PPR_1
PPR_2
Vps39_1
PPR
PPR_3
Vps39_1
PPR_3
PPR_1
PPR
PPR_2
PPR_long
TPR_16
PPR_2
PPR_1
PPR_3
PPR
ATP13
TPR_14
PPR_long
PPR
PPR_1
PPR
PPR_2
TPR_14
TPR_16
PPR_3
PPR_2
PPR
PPR_3
SNAPc_SNAP43
DYW_deaminase

References:

ATP13

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

SNAPc_SNAP43

DYW_deaminase

TPR_16

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.00027	11	30.00	52	78
TPR_16	Tetratricopeptide repeat	0.48	1	32.70	57	72
TPR_14	Tetratricopeptide repeat	0.31	2	23.50	58	73
PPR	PPR repeat	0.011	6	25.00	59	77
PPR_1	PPR repeat	0.12	2	23.80	60	74
PPR_2	PPR repeat family	2.8E-09	27	30.00	77	108
PPR_3	Pentatricopeptide repeat domain	0.72	0	25.00	79	119
PPR	PPR repeat	7.7E-08	22	25.00	80	108
PPR_1	PPR repeat	0.00011	12	23.80	83	105
PPR_1	PPR repeat	9.8E-08	21	23.80	109	136
PPR_2	PPR repeat family	6.7E-15	45	30.00	109	157
PPR_3	Pentatricopeptide repeat domain	0.22	1	25.00	110	154
PPR	PPR repeat	1.4E-09	28	25.00	111	139
TPR_14	Tetratricopeptide repeat	0.011	7	23.50	113	147
Vps39_1	Vacuolar sorting protein 39 domain 1	0.28	1	21.40	113	141
ATP13	Mitochondrial ATPase expression	0.68	-1	26.70	114	141
PPR_long	Pentacotripeptide-repeat region of PRORP	0.33	0	27.00	121	153
PPR_1	PPR repeat	0.0064	6	23.80	145	154
PPR_1	PPR repeat	0.00035	10	23.80	188	209
PPR	PPR repeat	0.00014	12	25.00	188	213
PPR_2	PPR repeat family	0.00033	11	30.00	188	213
PPR_2	PPR repeat family	2.6E-14	43	30.00	213	260
PPR_1	PPR repeat	5.1E-06	16	23.80	214	242
PPR_3	Pentatricopeptide repeat domain	1.1E-05	15	25.00	214	262
Vps39_1	Vacuolar sorting protein 39 domain 1	0.6	0	21.40	214	246
PPR	PPR repeat	4.8E-09	26	25.00	216	245
PPR_long	Pentacotripeptide-repeat region of PRORP	0.07	2	27.00	233	270
PPR	PPR repeat	0.0011	9	25.00	289	315
PPR_2	PPR repeat family	0.0085	6	30.00	289	313
PPR_1	PPR repeat	0.56	0	23.80	295	311
PPR_1	PPR repeat	0.0009	9	23.80	313	342
PPR_3	Pentatricopeptide repeat domain	0.16	2	25.00	313	343
PPR_2	PPR repeat family	5.1E-07	20	30.00	315	347
PPR	PPR repeat	1.3E-08	25	25.00	317	347
PPR_long	Pentacotripeptide-repeat region of PRORP	0.13	1	27.00	366	464
PPR	PPR repeat	2.1E-05	14	25.00	390	412
PPR_2	PPR repeat family	0.023	5	30.00	390	411
PPR_1	PPR repeat	0.14	2	23.80	390	410
PPR_1	PPR repeat	0.0019	8	23.80	416	444
PPR_2	PPR repeat family	4.9E-11	32	30.00	416	461
Vps39_1	Vacuolar sorting protein 39 domain 1	0.0029	8	21.40	417	446
PPR	PPR repeat	1.4E-08	24	25.00	418	447
PPR_3	Pentatricopeptide repeat domain	0.029	4	25.00	418	461
Vps39_1	Vacuolar sorting protein 39 domain 1	0.67	0	21.40	490	515
PPR_3	Pentatricopeptide repeat domain	0.18	2	25.00	493	513
PPR_1	PPR repeat	4.1E-06	16	23.80	493	513
PPR	PPR repeat	2.9E-06	17	25.00	493	516
PPR_2	PPR repeat family	7.3E-05	13	30.00	493	517
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0031	6	27.00	501	598
TPR_16	Tetratricopeptide repeat	0.017	6	32.70	517	545
PPR_2	PPR repeat family	2.5E-11	33	30.00	517	563
PPR_1	PPR repeat	0.0032	7	23.80	517	544
PPR_3	Pentatricopeptide repeat domain	6.9E-05	13	25.00	517	554
PPR	PPR repeat	7.2E-09	25	25.00	519	549
ATP13	Mitochondrial ATPase expression	0.0031	7	26.70	521	591
TPR_14	Tetratricopeptide repeat	0.0028	8	23.50	521	557
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0024	7	27.00	537	683
PPR	PPR repeat	0.089	3	25.00	559	579
PPR_1	PPR repeat	1.5E-06	18	23.80	585	615
PPR	PPR repeat	2.7E-06	17	25.00	592	615
PPR_2	PPR repeat family	6.4E-06	16	30.00	592	631
TPR_14	Tetratricopeptide repeat	0.15	3	23.50	592	614
TPR_16	Tetratricopeptide repeat	0.41	1	32.70	598	612
PPR_3	Pentatricopeptide repeat domain	0.023	5	25.00	613	645
PPR_2	PPR repeat family	0.039	4	30.00	656	688
PPR	PPR repeat	5.8E-05	13	25.00	658	687
PPR_3	Pentatricopeptide repeat domain	0.44	0	25.00	659	688
SNAPc_SNAP43	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	0.00022	11	25.00	663	758
DYW_deaminase	DYW family of nucleic acid deaminases	2.7E-38	120	31.60	693	814