c2pfam

AT3G02130.1 :

Domain Description Evalue Bits GA Start End
LRRNT_2 Leucine rich repeat N-terminal domain 2.1E-15 46 20.70 43 83
LRR_8 Leucine rich repeat 1.1E-06 18 27.00 138 179
LRR_4 Leucine Rich repeats (2 copies) 2.5E-05 14 27.00 144 183
LRR_6 Leucine Rich repeat 0.27 1 23.40 169 182
LRR_1 Leucine Rich Repeat 0.011 6 20.60 169 190
LRR_8 Leucine rich repeat 5.4E-10 29 27.00 185 228
LRR_6 Leucine Rich repeat 0.6 0 23.40 192 207
LRR_1 Leucine Rich Repeat 0.00049 11 20.60 193 215
LRR_4 Leucine Rich repeats (2 copies) 8E-08 22 27.00 193 228
LRR_6 Leucine Rich repeat 0.017 5 23.40 215 230
LRR_1 Leucine Rich Repeat 0.0078 7 20.60 217 250
LRR_8 Leucine rich repeat 2.5E-06 17 27.00 252 296
LRR_4 Leucine Rich repeats (2 copies) 7.3E-06 16 27.00 263 296
LRR_1 Leucine Rich Repeat 1.1E-06 19 20.60 263 285
LRR_6 Leucine Rich repeat 0.028 5 23.40 263 272
LRR_4 Leucine Rich repeats (2 copies) 8.4E-06 16 27.00 288 323
LRR_8 Leucine rich repeat 1E-06 18 27.00 288 343
LRR_6 Leucine Rich repeat 0.02 5 23.40 309 324
LRR_4 Leucine Rich repeats (2 copies) 0.00019 12 27.00 310 343
LRR_1 Leucine Rich Repeat 0.022 6 20.60 311 333
LRR_8 Leucine rich repeat 5.1E-07 19 27.00 410 448
LRR_4 Leucine Rich repeats (2 copies) 3E-07 20 27.00 412 448
LRR_1 Leucine Rich Repeat 0.3 2 20.60 413 435
LRR_6 Leucine Rich repeat 0.002 8 23.40 434 451
LRR_1 Leucine Rich Repeat 0.0097 7 20.60 437 454
Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain 0.00031 10 26.70 581 652
LRR_4 Leucine Rich repeats (2 copies) 0.0009 9 27.00 590 626
LRR_8 Leucine rich repeat 2.6E-06 17 27.00 590 646
LRR_1 Leucine Rich Repeat 0.25 2 20.60 611 631
LRR_6 Leucine Rich repeat 0.0052 7 23.40 635 648
LRR_1 Leucine Rich Repeat 0.012 6 20.60 636 654
LRR_4 Leucine Rich repeats (2 copies) 0.00016 12 27.00 636 672
LRR_4 Leucine Rich repeats (2 copies) 8.4E-08 22 27.00 661 695
LRR_8 Leucine rich repeat 5.2E-14 41 27.00 661 719
LRR_1 Leucine Rich Repeat 0.0034 8 20.60 661 681
LRR_6 Leucine Rich repeat 0.098 3 23.40 661 673
LRR_6 Leucine Rich repeat 0.041 4 23.40 683 697
LRR_4 Leucine Rich repeats (2 copies) 1.2E-05 15 27.00 684 721
LRR_1 Leucine Rich Repeat 0.0011 9 20.60 685 706
LRR_1 Leucine Rich Repeat 0.017 6 20.60 708 727
Pkinase Protein kinase domain 0 152 20.40 876 1073
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 0 134 23.10 877 1143
APH Phosphotransferase enzyme family 0.056 3 22.40 896 986
APH Phosphotransferase enzyme family 9.2E-06 15 22.40 968 1019
Pkinase_fungal Fungal protein kinase 3.3E-05 12 24.10 980 1043
Endonuclease_5 Endonuclease V 2.6E-05 14 20.00 998 1085

1151

LRRNT_2
LRR_8
LRR_4
LRR_6
LRR_1
LRR_8
LRR_6
LRR_1
LRR_4
LRR_6
LRR_1
LRR_8
LRR_4
LRR_1
LRR_6
LRR_4
LRR_8
LRR_6
LRR_4
LRR_1
LRR_8
LRR_4
LRR_1
LRR_6
LRR_1
Dimer_Tnp_Tn5
LRR_4
LRR_8
LRR_1
LRR_6
LRR_1
LRR_4
LRR_4
LRR_8
LRR_1
LRR_6
LRR_6
LRR_4
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
APH
APH
Pkinase_fungal
Endonuclease_5

References:

LRR_8

Pkinase_fungal

Dimer_Tnp_Tn5

Endonuclease_5
8990280 nfi, the gene for endonuclease V in Escherichia coli K-12. J Bacteriol 1997;179:310-316.
6246346 Purification and properties of Escherichia coli endodeoxyribonuclease V. Methods Enzymol 1980;65:224-231.

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRRNT_2
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.

LRR_6

LRR_4

APH
2163618 Cloning of aminoglycoside phosphotransferase (APH) gene from antibiotic- producing strain of Bacillus circulans into a high-expression vector, pKK223-3. Purification, properties and location of the enzyme [published erratum appears in Biochem J 1991 Feb 1 Biochem J 1990;268:671-677.
2167474 PCR cloning of a streptomycin phosphotransferase (aphE) gene from Streptomyces griseus ATCC 12475. Nucleic Acids Res 1990;18:4615-4615.

PK_Tyr_Ser-Thr

Domain	Description	Evalue	Bits	GA	Start	End
LRRNT_2	Leucine rich repeat N-terminal domain	2.1E-15	46	20.70	43	83
LRR_8	Leucine rich repeat	1.1E-06	18	27.00	138	179
LRR_4	Leucine Rich repeats (2 copies)	2.5E-05	14	27.00	144	183
LRR_6	Leucine Rich repeat	0.27	1	23.40	169	182
LRR_1	Leucine Rich Repeat	0.011	6	20.60	169	190
LRR_8	Leucine rich repeat	5.4E-10	29	27.00	185	228
LRR_6	Leucine Rich repeat	0.6	0	23.40	192	207
LRR_1	Leucine Rich Repeat	0.00049	11	20.60	193	215
LRR_4	Leucine Rich repeats (2 copies)	8E-08	22	27.00	193	228
LRR_6	Leucine Rich repeat	0.017	5	23.40	215	230
LRR_1	Leucine Rich Repeat	0.0078	7	20.60	217	250
LRR_8	Leucine rich repeat	2.5E-06	17	27.00	252	296
LRR_4	Leucine Rich repeats (2 copies)	7.3E-06	16	27.00	263	296
LRR_1	Leucine Rich Repeat	1.1E-06	19	20.60	263	285
LRR_6	Leucine Rich repeat	0.028	5	23.40	263	272
LRR_4	Leucine Rich repeats (2 copies)	8.4E-06	16	27.00	288	323
LRR_8	Leucine rich repeat	1E-06	18	27.00	288	343
LRR_6	Leucine Rich repeat	0.02	5	23.40	309	324
LRR_4	Leucine Rich repeats (2 copies)	0.00019	12	27.00	310	343
LRR_1	Leucine Rich Repeat	0.022	6	20.60	311	333
LRR_8	Leucine rich repeat	5.1E-07	19	27.00	410	448
LRR_4	Leucine Rich repeats (2 copies)	3E-07	20	27.00	412	448
LRR_1	Leucine Rich Repeat	0.3	2	20.60	413	435
LRR_6	Leucine Rich repeat	0.002	8	23.40	434	451
LRR_1	Leucine Rich Repeat	0.0097	7	20.60	437	454
Dimer_Tnp_Tn5	Transposase Tn5 dimerisation domain	0.00031	10	26.70	581	652
LRR_4	Leucine Rich repeats (2 copies)	0.0009	9	27.00	590	626
LRR_8	Leucine rich repeat	2.6E-06	17	27.00	590	646
LRR_1	Leucine Rich Repeat	0.25	2	20.60	611	631
LRR_6	Leucine Rich repeat	0.0052	7	23.40	635	648
LRR_1	Leucine Rich Repeat	0.012	6	20.60	636	654
LRR_4	Leucine Rich repeats (2 copies)	0.00016	12	27.00	636	672
LRR_4	Leucine Rich repeats (2 copies)	8.4E-08	22	27.00	661	695
LRR_8	Leucine rich repeat	5.2E-14	41	27.00	661	719
LRR_1	Leucine Rich Repeat	0.0034	8	20.60	661	681
LRR_6	Leucine Rich repeat	0.098	3	23.40	661	673
LRR_6	Leucine Rich repeat	0.041	4	23.40	683	697
LRR_4	Leucine Rich repeats (2 copies)	1.2E-05	15	27.00	684	721
LRR_1	Leucine Rich Repeat	0.0011	9	20.60	685	706
LRR_1	Leucine Rich Repeat	0.017	6	20.60	708	727
Pkinase	Protein kinase domain	0	152	20.40	876	1073
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	0	134	23.10	877	1143
APH	Phosphotransferase enzyme family	0.056	3	22.40	896	986
APH	Phosphotransferase enzyme family	9.2E-06	15	22.40	968	1019
Pkinase_fungal	Fungal protein kinase	3.3E-05	12	24.10	980	1043
Endonuclease_5	Endonuclease V	2.6E-05	14	20.00	998	1085