c2pfam

AT3G02650.1 :

Domain Description Evalue Bits GA Start End
GGDEF_2 GGDEF-like domain 0.00052 10 24.50 139 217
PPR_2 PPR repeat family 7.1E-09 26 30.00 234 278
PPR_3 Pentatricopeptide repeat domain 9.2E-05 13 25.00 234 275
PPR_long Pentacotripeptide-repeat region of PRORP 2.2E-08 24 27.00 236 326
PPR_1 PPR repeat 0.82 -1 23.80 237 255
PPR PPR repeat 0.00089 10 25.00 237 262
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.27 0 25.90 243 293
PPR_1 PPR repeat 0.00094 9 23.80 261 292
PPR PPR repeat 0.00052 10 25.00 273 297
PPR_2 PPR repeat family 0.085 3 30.00 273 297
PPR_2 PPR repeat family 7.3E-05 13 30.00 306 328
PPR PPR repeat 0.00012 12 25.00 307 326
PPR_1 PPR repeat 0.0011 9 23.80 307 324
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.34 1 27.20 311 339
PPR_1 PPR repeat 0.07 3 23.80 341 349
PPR PPR repeat 0.66 1 25.00 341 349
PPR_3 Pentatricopeptide repeat domain 0.049 4 25.00 375 418
Clathrin Region in Clathrin and VPS 0.019 5 23.60 376 432
PPR PPR repeat 2E-05 15 25.00 377 402
PPR_2 PPR repeat family 0.0014 9 30.00 378 405
PPR_1 PPR repeat 0.00012 12 23.80 378 398
TPR_14 Tetratricopeptide repeat 0.15 3 23.50 384 412
TPR_19 Tetratricopeptide repeat 7E-05 13 25.00 385 431
PPR_long Pentacotripeptide-repeat region of PRORP 3.4E-09 26 27.00 386 466
PPR_1 PPR repeat 0.0001 12 23.80 406 434
PPR_3 Pentatricopeptide repeat domain 3.3E-10 30 25.00 408 452
PPR_2 PPR repeat family 5.3E-15 45 30.00 408 454
PPR PPR repeat 4.3E-09 26 25.00 409 438
TPR_14 Tetratricopeptide repeat 0.044 5 23.50 414 438
TPR_8 Tetratricopeptide repeat 0.0028 8 25.70 414 431
Mtf2 Mtf2 family 0.56 0 27.00 420 448
PPR_3 Pentatricopeptide repeat domain 1.9E-11 34 25.00 429 485
PPR_1 PPR repeat 1.8E-12 37 23.80 436 467
PPR PPR repeat 6.3E-09 26 25.00 443 471
Clathrin Region in Clathrin and VPS 0.0018 8 23.60 446 506
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.0038 7 28.10 448 476
PPR_2 PPR repeat family 1.6E-09 28 30.00 448 489
TPR_14 Tetratricopeptide repeat 0.15 3 23.50 450 483
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.0022 8 27.20 456 502
TPR_19 Tetratricopeptide repeat 0.0045 8 25.00 458 502
PPR_long Pentacotripeptide-repeat region of PRORP 2.7E-08 23 27.00 458 547
PPR_3 Pentatricopeptide repeat domain 1.7E-10 31 25.00 464 522
MRP-S27 Mitochondrial 28S ribosomal protein S27 5.4E-08 22 25.90 474 543
PPR_1 PPR repeat 2E-10 30 23.80 477 503
PPR_2 PPR repeat family 1.2E-14 44 30.00 478 523
PPR PPR repeat 1.9E-11 34 25.00 478 508
TPR_14 Tetratricopeptide repeat 0.061 5 23.50 480 505
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.0015 8 28.10 483 503
Mtf2 Mtf2 family 0.79 -1 27.00 497 512
PPR_3 Pentatricopeptide repeat domain 8.2E-08 22 25.00 498 545
PPR_1 PPR repeat 2.4E-06 17 23.80 507 540
Mtf2 Mtf2 family 0.00099 9 27.00 511 562
PPR_2 PPR repeat family 1.2E-08 25 30.00 515 549
PPR PPR repeat 8.2E-06 16 25.00 523 544

576

GGDEF_2
PPR_2
PPR_3
PPR_long
PPR_1
PPR
MRP-S27
PPR_1
PPR
PPR_2
PPR_2
PPR
PPR_1
ANAPC3
PPR_1
PPR
PPR_3
Clathrin
PPR
PPR_2
PPR_1
TPR_14
TPR_19
PPR_long
PPR_1
PPR_3
PPR_2
PPR
TPR_14
TPR_8
Mtf2
PPR_3
PPR_1
PPR
Clathrin
SPOB_a
PPR_2
TPR_14
ANAPC3
TPR_19
PPR_long
PPR_3
MRP-S27
PPR_1
PPR_2
PPR
TPR_14
SPOB_a
Mtf2
PPR_3
PPR_1
Mtf2
PPR_2
PPR

References:

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

TPR_19

GGDEF_2

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

ANAPC3

Mtf2

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
GGDEF_2	GGDEF-like domain	0.00052	10	24.50	139	217
PPR_2	PPR repeat family	7.1E-09	26	30.00	234	278
PPR_3	Pentatricopeptide repeat domain	9.2E-05	13	25.00	234	275
PPR_long	Pentacotripeptide-repeat region of PRORP	2.2E-08	24	27.00	236	326
PPR_1	PPR repeat	0.82	-1	23.80	237	255
PPR	PPR repeat	0.00089	10	25.00	237	262
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.27	0	25.90	243	293
PPR_1	PPR repeat	0.00094	9	23.80	261	292
PPR	PPR repeat	0.00052	10	25.00	273	297
PPR_2	PPR repeat family	0.085	3	30.00	273	297
PPR_2	PPR repeat family	7.3E-05	13	30.00	306	328
PPR	PPR repeat	0.00012	12	25.00	307	326
PPR_1	PPR repeat	0.0011	9	23.80	307	324
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.34	1	27.20	311	339
PPR_1	PPR repeat	0.07	3	23.80	341	349
PPR	PPR repeat	0.66	1	25.00	341	349
PPR_3	Pentatricopeptide repeat domain	0.049	4	25.00	375	418
Clathrin	Region in Clathrin and VPS	0.019	5	23.60	376	432
PPR	PPR repeat	2E-05	15	25.00	377	402
PPR_2	PPR repeat family	0.0014	9	30.00	378	405
PPR_1	PPR repeat	0.00012	12	23.80	378	398
TPR_14	Tetratricopeptide repeat	0.15	3	23.50	384	412
TPR_19	Tetratricopeptide repeat	7E-05	13	25.00	385	431
PPR_long	Pentacotripeptide-repeat region of PRORP	3.4E-09	26	27.00	386	466
PPR_1	PPR repeat	0.0001	12	23.80	406	434
PPR_3	Pentatricopeptide repeat domain	3.3E-10	30	25.00	408	452
PPR_2	PPR repeat family	5.3E-15	45	30.00	408	454
PPR	PPR repeat	4.3E-09	26	25.00	409	438
TPR_14	Tetratricopeptide repeat	0.044	5	23.50	414	438
TPR_8	Tetratricopeptide repeat	0.0028	8	25.70	414	431
Mtf2	Mtf2 family	0.56	0	27.00	420	448
PPR_3	Pentatricopeptide repeat domain	1.9E-11	34	25.00	429	485
PPR_1	PPR repeat	1.8E-12	37	23.80	436	467
PPR	PPR repeat	6.3E-09	26	25.00	443	471
Clathrin	Region in Clathrin and VPS	0.0018	8	23.60	446	506
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.0038	7	28.10	448	476
PPR_2	PPR repeat family	1.6E-09	28	30.00	448	489
TPR_14	Tetratricopeptide repeat	0.15	3	23.50	450	483
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.0022	8	27.20	456	502
TPR_19	Tetratricopeptide repeat	0.0045	8	25.00	458	502
PPR_long	Pentacotripeptide-repeat region of PRORP	2.7E-08	23	27.00	458	547
PPR_3	Pentatricopeptide repeat domain	1.7E-10	31	25.00	464	522
MRP-S27	Mitochondrial 28S ribosomal protein S27	5.4E-08	22	25.90	474	543
PPR_1	PPR repeat	2E-10	30	23.80	477	503
PPR_2	PPR repeat family	1.2E-14	44	30.00	478	523
PPR	PPR repeat	1.9E-11	34	25.00	478	508
TPR_14	Tetratricopeptide repeat	0.061	5	23.50	480	505
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.0015	8	28.10	483	503
Mtf2	Mtf2 family	0.79	-1	27.00	497	512
PPR_3	Pentatricopeptide repeat domain	8.2E-08	22	25.00	498	545
PPR_1	PPR repeat	2.4E-06	17	23.80	507	540
Mtf2	Mtf2 family	0.00099	9	27.00	511	562
PPR_2	PPR repeat family	1.2E-08	25	30.00	515	549
PPR	PPR repeat	8.2E-06	16	25.00	523	544