AT1G12470.1 :

DomainDescriptionEvalueBitsGAStartEnd
Pep3_Vps18Pep3/Vps18/deep orange family013120.50248402
ClathrinRegion in Clathrin and VPS0.015523.60496562
ClathrinRegion in Clathrin and VPS9.6E-144123.60593745
Vps39_2Vacuolar sorting protein 39 domain 21.9E-051521.20766843
Occludin_ELLOccludin homology domain0.000511125.30788842
Nup54_57_CNUP57/Nup54 C-terminal domain1.4E-051525.60792808
zf-ANAPC11Anaphase-promoting complex subunit 11 RING-H2 finger0.000261121.40830885
zf-rbx1RING-H2 zinc finger domain2.6E-051431.00835881
zf-RING_5zinc-RING finger domain3.6E-061727.90836884
zf-RING_UBOXRING-type zinc-finger9.2E-061625.20851879
zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)1.6E-051527.00864882
zf-RING_11RING-like zinc finger7.6E-061627.00865879
zf-C3HC4Zinc finger, C3HC4 type (RING finger)0.000181121.00867885
zf-RING_2Ring finger domain0.0032827.30868884
zf-RING_5zinc-RING finger domain0.74027.90940947

 988

Pep3_Vps18
Clathrin
Clathrin
Vps39_2
Occludin_ELL
Nup54_57_C
zf-ANAPC11
zf-rbx1
zf-RING_5
zf-RING_UBOX
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-RING_2
zf-RING_5


References:

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

Pep3_Vps18
9065698 Molecular characterization of the deep orange (dor) gene of Drosophila melanogaster. Mol Gen Genet 1997;253:642-648.
1944264 Isolation and characterization of PEP3, a gene required for vacuolar biogenesis in Saccharomyces cerevisiae. Mol Cell Biol 1991;11:5801-5812.
1840635 A putative zinc finger protein, Saccharomyces cerevisiae Vps18p, affects late Golgi functions required for vacuolar protein sorting and efficient alpha-factor prohormone maturation. Mol Cell Biol 1991;11:5813-5824.

Occludin_ELL
8276896 Occludin: a novel integral membrane protein localizing at tight junctions. J Cell Biol 1993;123:1777-1788.
8596958 An RNA polymerase II elongation factor encoded by the human ELL gene. Science 1996;271:1873-1876.
16081103 Structure of the conserved cytoplasmic C-terminal domain of occludin: identification of the ZO-1 binding surface. J Mol Biol. 2005;352:151-164.

zf-ANAPC11

Nup54_57_C

zf-RING_5

zf-RING_2

zf-rbx1

zf-RING_11

zf-C3HC4_2

zf-RING_UBOX

Vps39_2
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.