c2pfam

AT3G03300.1 :

Domain Description Evalue Bits GA Start End
ResIII Type III restriction enzyme, res subunit 1.9E-14 44 20.90 25 190
DEAD DEAD/DEAH box helicase 9.1E-17 51 20.60 26 191
AAA_22 AAA domain 0.00027 11 27.00 40 157
Helicase_C Helicase conserved C-terminal domain 2.2E-20 63 20.90 378 490
Dicer_dimer Dicer dimerisation domain 6.6E-23 70 22.60 559 637
PAZ PAZ domain 0.034 4 20.80 648 673
PAZ PAZ domain 1.7E-24 76 20.80 815 957
Ribonucleas_3_3 Ribonuclease-III-like 4.9E-05 13 35.00 992 1052
Ribonuclease_3 RNase3 domain 3.6E-23 72 21.50 995 1113
Ribonucleas_3_3 Ribonuclease-III-like 0.02 5 35.00 1095 1121
Ribonucleas_3_3 Ribonuclease-III-like 3.3E-18 56 35.00 1162 1300
Ribonuclease_3 RNase3 domain 8.9E-25 77 21.50 1185 1296
AMP-binding_C_2 AMP-binding enzyme C-terminal domain 0.00021 11 25.00 1323 1374
dsrm Double-stranded RNA binding motif 0.0001 13 21.00 1346 1382

1388

ResIII
DEAD
AAA_22
Helicase_C
Dicer_dimer
PAZ
PAZ
Ribonucleas_3_3
Ribonuclease_3
Ribonucleas_3_3
Ribonucleas_3_3
Ribonuclease_3
AMP-binding_C_2
dsrm

References:

Ribonucleas_3_3

AAA_22

dsrm
8036511 Conserved structures and diversity of functions of RNA-binding proteins. Science 1994;265:615-621.

ResIII

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

PAZ
11050429 Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain. Trends Biochem Sci 2000;25:481-482.
14625589 The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes. Nat Struct Biol 2003;10:1026-1032.
14615802 Structure and conserved RNA binding of the PAZ domain. Nature 2003;426:468-474.
14615801 Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain. Nature 2003;426:465-469.

Helicase_C

Dicer_dimer

Ribonuclease_3

AMP-binding_C_2

Domain	Description	Evalue	Bits	GA	Start	End
ResIII	Type III restriction enzyme, res subunit	1.9E-14	44	20.90	25	190
DEAD	DEAD/DEAH box helicase	9.1E-17	51	20.60	26	191
AAA_22	AAA domain	0.00027	11	27.00	40	157
Helicase_C	Helicase conserved C-terminal domain	2.2E-20	63	20.90	378	490
Dicer_dimer	Dicer dimerisation domain	6.6E-23	70	22.60	559	637
PAZ	PAZ domain	0.034	4	20.80	648	673
PAZ	PAZ domain	1.7E-24	76	20.80	815	957
Ribonucleas_3_3	Ribonuclease-III-like	4.9E-05	13	35.00	992	1052
Ribonuclease_3	RNase3 domain	3.6E-23	72	21.50	995	1113
Ribonucleas_3_3	Ribonuclease-III-like	0.02	5	35.00	1095	1121
Ribonucleas_3_3	Ribonuclease-III-like	3.3E-18	56	35.00	1162	1300
Ribonuclease_3	RNase3 domain	8.9E-25	77	21.50	1185	1296
AMP-binding_C_2	AMP-binding enzyme C-terminal domain	0.00021	11	25.00	1323	1374
dsrm	Double-stranded RNA binding motif	0.0001	13	21.00	1346	1382