c2pfam

AT3G03580.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 8.2E-13 39 30.00 69 117
PPR_1 PPR repeat 0.00096 9 23.80 70 94
PPR_3 Pentatricopeptide repeat domain 8.2E-06 16 25.00 70 117
Clathrin Region in Clathrin and VPS 0.033 4 23.60 72 99
TPR_1 Tetratricopeptide repeat 0.0065 7 20.40 72 96
BTAD Bacterial transcriptional activator domain 0.58 1 21.00 73 99
PPR PPR repeat 1.8E-08 25 25.00 73 101
ATP13 Mitochondrial ATPase expression 0.42 1 26.70 75 98
TPR_7 Tetratricopeptide repeat 0.27 2 27.90 79 97
PPR_long Pentacotripeptide-repeat region of PRORP 0.013 5 27.00 87 166
PPR_1 PPR repeat 0.66 0 23.80 102 115
PPR_3 Pentatricopeptide repeat domain 0.03 5 25.00 133 167
Clathrin Region in Clathrin and VPS 0.095 3 23.60 143 200
PPR_1 PPR repeat 3.7E-05 14 23.80 144 167
PPR_2 PPR repeat family 0.00068 10 30.00 144 170
PPR PPR repeat 5.7E-06 17 25.00 145 170
AEP1 ATPase expression protein 1 0.51 -1 27.00 145 182
TPR_14 Tetratricopeptide repeat 0.8 1 23.50 146 166
BTAD Bacterial transcriptional activator domain 0.0052 7 21.00 156 200
PPR_2 PPR repeat family 3.7E-13 40 30.00 171 217
PPR_1 PPR repeat 5.5E-06 16 23.80 171 197
PPR_3 Pentatricopeptide repeat domain 5.3E-05 13 25.00 171 219
PPR PPR repeat 1.9E-11 34 25.00 173 201
TPR_7 Tetratricopeptide repeat 0.044 4 27.90 182 197
TPR_1 Tetratricopeptide repeat 0.18 2 20.40 187 196
PPR_2 PPR repeat family 0.0021 9 30.00 242 269
AEP1 ATPase expression protein 1 0.98 -2 27.00 245 286
PPR PPR repeat 0.0017 9 25.00 246 269
PPR_1 PPR repeat 0.21 2 23.80 260 268
PPR_1 PPR repeat 0.00011 12 23.80 272 296
PPR_2 PPR repeat family 4.7E-09 27 30.00 272 317
PPR PPR repeat 3.5E-07 21 25.00 274 298
Clathrin Region in Clathrin and VPS 0.077 3 23.60 276 335
PPR_3 Pentatricopeptide repeat domain 0.0008 10 25.00 301 337
PPR_long Pentacotripeptide-repeat region of PRORP 0.011 5 27.00 302 357
PPR_2 PPR repeat family 0.022 5 30.00 305 338
PPR PPR repeat 0.0016 9 25.00 309 338
AEP1 ATPase expression protein 1 0.0031 7 27.00 338 386
PPR PPR repeat 4.4E-07 20 25.00 346 371
PPR_2 PPR repeat family 0.00011 13 30.00 346 371
PPR_3 Pentatricopeptide repeat domain 0.52 1 25.00 346 369
PPR_1 PPR repeat 0.00034 11 23.80 346 369
PPR_2 PPR repeat family 8.5E-12 35 30.00 371 416
PPR_1 PPR repeat 1.3E-08 25 23.80 372 399
PPR_3 Pentatricopeptide repeat domain 0.0051 7 25.00 372 399
PPR PPR repeat 5E-10 29 25.00 374 400
TPR_1 Tetratricopeptide repeat 0.84 0 20.40 376 397
ATP13 Mitochondrial ATPase expression 0.29 1 26.70 377 400
TPR_19 Tetratricopeptide repeat 0.35 2 25.00 384 408
PPR_3 Pentatricopeptide repeat domain 0.35 1 25.00 437 469
Clathrin Region in Clathrin and VPS 0.16 2 23.60 444 484
PPR_1 PPR repeat 0.00057 10 23.80 447 469
PPR PPR repeat 1.7E-05 15 25.00 447 469
PPR_2 PPR repeat family 0.0016 9 30.00 447 469
PPR_2 PPR repeat family 2.1E-09 28 30.00 473 519
PPR_1 PPR repeat 0.0039 7 23.80 473 500
PPR_3 Pentatricopeptide repeat domain 1.6E-05 15 25.00 473 519
PPR PPR repeat 4.2E-06 17 25.00 475 503
PPR_long Pentacotripeptide-repeat region of PRORP 0.0028 7 27.00 476 559
AEP1 ATPase expression protein 1 0.2 1 27.00 548 585
PPR PPR repeat 7.3E-06 16 25.00 548 574
PPR_2 PPR repeat family 0.0013 9 30.00 548 575
PPR_3 Pentatricopeptide repeat domain 0.37 1 25.00 548 571
PPR_1 PPR repeat 0.033 4 23.80 548 571
PPR_3 Pentatricopeptide repeat domain 4.9E-08 23 25.00 573 620
PPR_2 PPR repeat family 2.7E-10 31 30.00 573 619
PPR_1 PPR repeat 0.0073 6 23.80 574 602
PPR PPR repeat 1.8E-08 25 25.00 576 606
TPR_1 Tetratricopeptide repeat 0.35 1 20.40 577 598
PPR_long Pentacotripeptide-repeat region of PRORP 3.6E-07 20 27.00 593 695
COX5A Cytochrome c oxidase subunit Va 0.39 1 21.30 598 643
ATP13 Mitochondrial ATPase expression 0.00079 9 26.70 601 642
PPR_1 PPR repeat 0.0016 8 23.80 605 637
PPR_2 PPR repeat family 0.00013 12 30.00 608 638
PPR PPR repeat 9.8E-06 16 25.00 612 638
PPR PPR repeat 0.19 3 25.00 649 672
ATP13 Mitochondrial ATPase expression 0.087 3 26.70 667 706
COX5A Cytochrome c oxidase subunit Va 0.0079 6 21.30 670 700
PPR_3 Pentatricopeptide repeat domain 0.11 3 25.00 673 703
PPR_2 PPR repeat family 0.77 0 30.00 676 700
TPR_8 Tetratricopeptide repeat 0.0024 8 25.70 679 711
PPR PPR repeat 0.27 2 25.00 680 700
TPR_14 Tetratricopeptide repeat 3.2E-05 15 23.50 681 714
TPR_19 Tetratricopeptide repeat 0.07 4 25.00 685 715
TPR_7 Tetratricopeptide repeat 0.5 1 27.90 686 708
TPR_1 Tetratricopeptide repeat 0.93 0 20.40 702 711
DYW_deaminase DYW family of nucleic acid deaminases 0 123 31.60 747 872

882

PPR_2
PPR_1
PPR_3
Clathrin
TPR_1
BTAD
PPR
ATP13
TPR_7
PPR_long
PPR_1
PPR_3
Clathrin
PPR_1
PPR_2
PPR
AEP1
TPR_14
BTAD
PPR_2
PPR_1
PPR_3
PPR
TPR_7
TPR_1
PPR_2
AEP1
PPR
PPR_1
PPR_1
PPR_2
PPR
Clathrin
PPR_3
PPR_long
PPR_2
PPR
AEP1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR_1
PPR_3
PPR
TPR_1
ATP13
TPR_19
PPR_3
Clathrin
PPR_1
PPR
PPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_long
AEP1
PPR
PPR_2
PPR_3
PPR_1
PPR_3
PPR_2
PPR_1
PPR
TPR_1
PPR_long
COX5A
ATP13
PPR_1
PPR_2
PPR
PPR
ATP13
COX5A
PPR_3
PPR_2
TPR_8
PPR
TPR_14
TPR_19
TPR_7
TPR_1
DYW_deaminase

References:

AEP1

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

DYW_deaminase

PPR_long

PPR_3

PPR_2

PPR_1

TPR_8

ATP13

BTAD
12625841 New Knowledge from Old: In silico discovery of novel protein domains in Streptomyces coelicolor. BMC Microbiol 2003;3:3-3.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_7

COX5A
8638158 The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A. Science 1996;272:1136-1144.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	8.2E-13	39	30.00	69	117
PPR_1	PPR repeat	0.00096	9	23.80	70	94
PPR_3	Pentatricopeptide repeat domain	8.2E-06	16	25.00	70	117
Clathrin	Region in Clathrin and VPS	0.033	4	23.60	72	99
TPR_1	Tetratricopeptide repeat	0.0065	7	20.40	72	96
BTAD	Bacterial transcriptional activator domain	0.58	1	21.00	73	99
PPR	PPR repeat	1.8E-08	25	25.00	73	101
ATP13	Mitochondrial ATPase expression	0.42	1	26.70	75	98
TPR_7	Tetratricopeptide repeat	0.27	2	27.90	79	97
PPR_long	Pentacotripeptide-repeat region of PRORP	0.013	5	27.00	87	166
PPR_1	PPR repeat	0.66	0	23.80	102	115
PPR_3	Pentatricopeptide repeat domain	0.03	5	25.00	133	167
Clathrin	Region in Clathrin and VPS	0.095	3	23.60	143	200
PPR_1	PPR repeat	3.7E-05	14	23.80	144	167
PPR_2	PPR repeat family	0.00068	10	30.00	144	170
PPR	PPR repeat	5.7E-06	17	25.00	145	170
AEP1	ATPase expression protein 1	0.51	-1	27.00	145	182
TPR_14	Tetratricopeptide repeat	0.8	1	23.50	146	166
BTAD	Bacterial transcriptional activator domain	0.0052	7	21.00	156	200
PPR_2	PPR repeat family	3.7E-13	40	30.00	171	217
PPR_1	PPR repeat	5.5E-06	16	23.80	171	197
PPR_3	Pentatricopeptide repeat domain	5.3E-05	13	25.00	171	219
PPR	PPR repeat	1.9E-11	34	25.00	173	201
TPR_7	Tetratricopeptide repeat	0.044	4	27.90	182	197
TPR_1	Tetratricopeptide repeat	0.18	2	20.40	187	196
PPR_2	PPR repeat family	0.0021	9	30.00	242	269
AEP1	ATPase expression protein 1	0.98	-2	27.00	245	286
PPR	PPR repeat	0.0017	9	25.00	246	269
PPR_1	PPR repeat	0.21	2	23.80	260	268
PPR_1	PPR repeat	0.00011	12	23.80	272	296
PPR_2	PPR repeat family	4.7E-09	27	30.00	272	317
PPR	PPR repeat	3.5E-07	21	25.00	274	298
Clathrin	Region in Clathrin and VPS	0.077	3	23.60	276	335
PPR_3	Pentatricopeptide repeat domain	0.0008	10	25.00	301	337
PPR_long	Pentacotripeptide-repeat region of PRORP	0.011	5	27.00	302	357
PPR_2	PPR repeat family	0.022	5	30.00	305	338
PPR	PPR repeat	0.0016	9	25.00	309	338
AEP1	ATPase expression protein 1	0.0031	7	27.00	338	386
PPR	PPR repeat	4.4E-07	20	25.00	346	371
PPR_2	PPR repeat family	0.00011	13	30.00	346	371
PPR_3	Pentatricopeptide repeat domain	0.52	1	25.00	346	369
PPR_1	PPR repeat	0.00034	11	23.80	346	369
PPR_2	PPR repeat family	8.5E-12	35	30.00	371	416
PPR_1	PPR repeat	1.3E-08	25	23.80	372	399
PPR_3	Pentatricopeptide repeat domain	0.0051	7	25.00	372	399
PPR	PPR repeat	5E-10	29	25.00	374	400
TPR_1	Tetratricopeptide repeat	0.84	0	20.40	376	397
ATP13	Mitochondrial ATPase expression	0.29	1	26.70	377	400
TPR_19	Tetratricopeptide repeat	0.35	2	25.00	384	408
PPR_3	Pentatricopeptide repeat domain	0.35	1	25.00	437	469
Clathrin	Region in Clathrin and VPS	0.16	2	23.60	444	484
PPR_1	PPR repeat	0.00057	10	23.80	447	469
PPR	PPR repeat	1.7E-05	15	25.00	447	469
PPR_2	PPR repeat family	0.0016	9	30.00	447	469
PPR_2	PPR repeat family	2.1E-09	28	30.00	473	519
PPR_1	PPR repeat	0.0039	7	23.80	473	500
PPR_3	Pentatricopeptide repeat domain	1.6E-05	15	25.00	473	519
PPR	PPR repeat	4.2E-06	17	25.00	475	503
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0028	7	27.00	476	559
AEP1	ATPase expression protein 1	0.2	1	27.00	548	585
PPR	PPR repeat	7.3E-06	16	25.00	548	574
PPR_2	PPR repeat family	0.0013	9	30.00	548	575
PPR_3	Pentatricopeptide repeat domain	0.37	1	25.00	548	571
PPR_1	PPR repeat	0.033	4	23.80	548	571
PPR_3	Pentatricopeptide repeat domain	4.9E-08	23	25.00	573	620
PPR_2	PPR repeat family	2.7E-10	31	30.00	573	619
PPR_1	PPR repeat	0.0073	6	23.80	574	602
PPR	PPR repeat	1.8E-08	25	25.00	576	606
TPR_1	Tetratricopeptide repeat	0.35	1	20.40	577	598
PPR_long	Pentacotripeptide-repeat region of PRORP	3.6E-07	20	27.00	593	695
COX5A	Cytochrome c oxidase subunit Va	0.39	1	21.30	598	643
ATP13	Mitochondrial ATPase expression	0.00079	9	26.70	601	642
PPR_1	PPR repeat	0.0016	8	23.80	605	637
PPR_2	PPR repeat family	0.00013	12	30.00	608	638
PPR	PPR repeat	9.8E-06	16	25.00	612	638
PPR	PPR repeat	0.19	3	25.00	649	672
ATP13	Mitochondrial ATPase expression	0.087	3	26.70	667	706
COX5A	Cytochrome c oxidase subunit Va	0.0079	6	21.30	670	700
PPR_3	Pentatricopeptide repeat domain	0.11	3	25.00	673	703
PPR_2	PPR repeat family	0.77	0	30.00	676	700
TPR_8	Tetratricopeptide repeat	0.0024	8	25.70	679	711
PPR	PPR repeat	0.27	2	25.00	680	700
TPR_14	Tetratricopeptide repeat	3.2E-05	15	23.50	681	714
TPR_19	Tetratricopeptide repeat	0.07	4	25.00	685	715
TPR_7	Tetratricopeptide repeat	0.5	1	27.90	686	708
TPR_1	Tetratricopeptide repeat	0.93	0	20.40	702	711
DYW_deaminase	DYW family of nucleic acid deaminases	0	123	31.60	747	872