c2pfam

AT3G03790.1 :

Domain Description Evalue Bits GA Start End
Ank_4 Ankyrin repeats (many copies) 7.2E-09 26 22.70 47 82
Ank_2 Ankyrin repeats (3 copies) 2.4E-13 40 27.30 48 126
Ank_5 Ankyrin repeats (many copies) 1.7E-12 37 27.00 52 97
Ank_3 Ankyrin repeat 3.7E-06 17 22.30 61 90
Ank Ankyrin repeat 2E-09 27 20.60 61 92
Ank_4 Ankyrin repeats (many copies) 5.8E-11 32 22.70 73 116
Ank_3 Ankyrin repeat 0.00037 11 22.30 96 121
Ank Ankyrin repeat 0.00063 10 20.60 96 124
Ank_5 Ankyrin repeats (many copies) 0.00056 10 27.00 98 135
RCC1 Regulator of chromosome condensation (RCC1) repeat 3E-12 36 21.10 151 198
RCC1_2 Regulator of chromosome condensation (RCC1) repeat 0.16 1 21.70 151 161
GAD-like GAD-like domain 0.082 2 25.00 186 210
RCC1_2 Regulator of chromosome condensation (RCC1) repeat 1E-05 15 21.70 188 208
RCC1 Regulator of chromosome condensation (RCC1) repeat 1.8E-11 34 21.10 202 256
RCC1_2 Regulator of chromosome condensation (RCC1) repeat 1.6E-08 24 21.70 244 273
GAD-like GAD-like domain 1 -2 25.00 249 269
RCC1 Regulator of chromosome condensation (RCC1) repeat 6.9E-14 42 21.10 261 308
Hira TUP1-like enhancer of split 0.21 1 20.30 290 321
RCC1_2 Regulator of chromosome condensation (RCC1) repeat 9.9E-07 18 21.70 295 324
RCC1 Regulator of chromosome condensation (RCC1) repeat 1.2E-14 44 21.10 312 362
GAD-like GAD-like domain 0.6 -1 25.00 336 374
RCC1_2 Regulator of chromosome condensation (RCC1) repeat 6.5E-09 25 21.70 351 372
RCC1 Regulator of chromosome condensation (RCC1) repeat 0.016 5 21.10 365 372
RCC1_2 Regulator of chromosome condensation (RCC1) repeat 0.023 4 21.70 407 423
Hira TUP1-like enhancer of split 0.00076 9 20.30 445 482
RCC1_2 Regulator of chromosome condensation (RCC1) repeat 0.0012 8 21.70 447 469
GAD-like GAD-like domain 0.012 5 25.00 449 477
RCC1 Regulator of chromosome condensation (RCC1) repeat 0.28 1 21.10 483 502

1078

Ank_4
Ank_2
Ank_5
Ank_3
Ank
Ank_4
Ank_3
Ank
Ank_5
RCC1
RCC1_2
GAD-like
RCC1_2
RCC1
RCC1_2
GAD-like
RCC1
Hira
RCC1_2
RCC1
GAD-like
RCC1_2
RCC1
RCC1_2
Hira
RCC1_2
GAD-like
RCC1

References:

RCC1_2

Ank_5

Ank_4

Ank_3

Ank_2

Ank
9013872 NMR structural characterization of the CDK inhibitor p19INK4d. FEBS Lett 1997;401:127-132.
2141669 Hereditary spherocytosis associated with deletion of human erythrocyte ankyrin gene on chromosome 8. Nature 1990;345:736-739.

GAD-like

RCC1
9510255 The 1.7 A crystal structure of the regulator of chromosome condensation (RCC1) reveals a seven-bladed propeller. Nature 1998;392:97-101.

Hira
8681138 Structural Organization of the WD repeat protein-encoding gene HIRA in the DiGeorge syndrome critical region of human chromosome 22. Genome Res 1996;6:43-50.
9063744 Cloning and developmental expression analysis of chick Hira (Chira), a candidate gene for DiGeorge syndrome. Hum Mol Genet 1997;6:237-245.
9524281 Isolation and genomic characterization of the TUPLE1/HIRA gene of the pufferfish Fugu rubripes. Gene 1998;208:279-283.
9710638 Core histones and HIRIP3, a novel histone-binding protein, directly interact with WD repeat protein HIRA. Mol Cell Biol 1998;18:5546-5556.

Domain	Description	Evalue	Bits	GA	Start	End
Ank_4	Ankyrin repeats (many copies)	7.2E-09	26	22.70	47	82
Ank_2	Ankyrin repeats (3 copies)	2.4E-13	40	27.30	48	126
Ank_5	Ankyrin repeats (many copies)	1.7E-12	37	27.00	52	97
Ank_3	Ankyrin repeat	3.7E-06	17	22.30	61	90
Ank	Ankyrin repeat	2E-09	27	20.60	61	92
Ank_4	Ankyrin repeats (many copies)	5.8E-11	32	22.70	73	116
Ank_3	Ankyrin repeat	0.00037	11	22.30	96	121
Ank	Ankyrin repeat	0.00063	10	20.60	96	124
Ank_5	Ankyrin repeats (many copies)	0.00056	10	27.00	98	135
RCC1	Regulator of chromosome condensation (RCC1) repeat	3E-12	36	21.10	151	198
RCC1_2	Regulator of chromosome condensation (RCC1) repeat	0.16	1	21.70	151	161
GAD-like	GAD-like domain	0.082	2	25.00	186	210
RCC1_2	Regulator of chromosome condensation (RCC1) repeat	1E-05	15	21.70	188	208
RCC1	Regulator of chromosome condensation (RCC1) repeat	1.8E-11	34	21.10	202	256
RCC1_2	Regulator of chromosome condensation (RCC1) repeat	1.6E-08	24	21.70	244	273
GAD-like	GAD-like domain	1	-2	25.00	249	269
RCC1	Regulator of chromosome condensation (RCC1) repeat	6.9E-14	42	21.10	261	308
Hira	TUP1-like enhancer of split	0.21	1	20.30	290	321
RCC1_2	Regulator of chromosome condensation (RCC1) repeat	9.9E-07	18	21.70	295	324
RCC1	Regulator of chromosome condensation (RCC1) repeat	1.2E-14	44	21.10	312	362
GAD-like	GAD-like domain	0.6	-1	25.00	336	374
RCC1_2	Regulator of chromosome condensation (RCC1) repeat	6.5E-09	25	21.70	351	372
RCC1	Regulator of chromosome condensation (RCC1) repeat	0.016	5	21.10	365	372
RCC1_2	Regulator of chromosome condensation (RCC1) repeat	0.023	4	21.70	407	423
Hira	TUP1-like enhancer of split	0.00076	9	20.30	445	482
RCC1_2	Regulator of chromosome condensation (RCC1) repeat	0.0012	8	21.70	447	469
GAD-like	GAD-like domain	0.012	5	25.00	449	477
RCC1	Regulator of chromosome condensation (RCC1) repeat	0.28	1	21.10	483	502