c2pfam

AT3G03800.1 :

Domain Description Evalue Bits GA Start End
DUF5798 Family of unknown function (DUF5798) 0.0026 9 27.00 33 89
Syntaxin Syntaxin 0 233 25.00 35 240
INT_SG_DDX_CT_C INTS6/SAGE1/DDX26B/CT45 C-terminus 0.00013 12 27.00 39 68
NOG1_N NOG1 N-terminal helical domain 0.0053 7 22.90 39 89
DUF2203 Uncharacterized conserved protein (DUF2203) 0.0011 10 20.80 39 98
Baculo_p24 Baculovirus P24 capsid protein 0.068 4 21.30 39 84
WXG100 Proteins of 100 residues with WXG 0.003 8 27.00 40 96
DASH_Dam1 DASH complex subunit Dam1 0.0076 7 21.40 40 65
Occludin_ELL Occludin homology domain 0.024 6 25.30 40 72
Vac_Fusion Chordopoxvirus fusion protein 0.15 2 21.00 40 60
FadA Adhesion protein FadA 0.033 5 23.00 41 71
Syntaxin_2 Syntaxin-like protein 0.0005 11 30.50 41 157
DUF1043 Protein of unknown function (DUF1043) 0.021 5 22.40 42 59
Helo_like_N Fungal N-terminal domain of STAND proteins 0.17 2 27.20 43 67
Enkurin Calmodulin-binding 0.016 6 23.60 43 89
ZapD Cell division protein 0.2 2 21.20 44 82
PTH2 Peptidyl-tRNA hydrolase PTH2 0.00034 12 21.10 117 202
WXG100 Proteins of 100 residues with WXG 0.29 2 27.00 132 158
Baculo_p24 Baculovirus P24 capsid protein 0.73 0 21.30 133 181
NOG1_N NOG1 N-terminal helical domain 0.22 2 22.90 133 160
FadA Adhesion protein FadA 0.0084 7 23.00 134 157
Occludin_ELL Occludin homology domain 0.058 5 25.30 136 167
DUF2203 Uncharacterized conserved protein (DUF2203) 0.01 7 20.80 141 229
ATPase_2 ATPase domain predominantly from Archaea 5.7E-05 14 33.20 148 238
DUF2383 Domain of unknown function (DUF2383) 0.00023 12 27.00 175 227
DUF5798 Family of unknown function (DUF5798) 0.033 5 27.00 186 233
T2SSF Type II secretion system (T2SS), protein F 4.5E-05 14 25.20 187 293
Enkurin Calmodulin-binding 0.012 7 23.60 188 240
NOG1_N NOG1 N-terminal helical domain 0.00078 10 22.90 190 228
Helo_like_N Fungal N-terminal domain of STAND proteins 1.4E-05 15 27.20 201 277
ZapD Cell division protein 0.002 8 21.20 204 270
Baculo_p24 Baculovirus P24 capsid protein 0.002 8 21.30 205 278
DASH_Dam1 DASH complex subunit Dam1 0.043 4 21.40 207 228
DUF1043 Protein of unknown function (DUF1043) 0.0041 8 22.40 207 272
Occludin_ELL Occludin homology domain 0.35 2 25.30 209 251
Vac_Fusion Chordopoxvirus fusion protein 0.0027 8 21.00 215 248
Baculo_PEP_N Baculovirus polyhedron envelope protein, PEP, N terminus 0.00038 11 21.30 225 281
WXG100 Proteins of 100 residues with WXG 0.99 0 27.00 238 269
SNARE SNARE domain 1.8E-23 73 30.00 241 293

306

DUF5798
Syntaxin
INT_SG_DDX_CT_C
NOG1_N
DUF2203
Baculo_p24
WXG100
DASH_Dam1
Occludin_ELL
Vac_Fusion
FadA
Syntaxin_2
DUF1043
Helo_like_N
Enkurin
ZapD
PTH2
WXG100
Baculo_p24
NOG1_N
FadA
Occludin_ELL
DUF2203
ATPase_2
DUF2383
DUF5798
T2SSF
Enkurin
NOG1_N
Helo_like_N
ZapD
Baculo_p24
DASH_Dam1
DUF1043
Occludin_ELL
Vac_Fusion
Baculo_PEP_N
WXG100
SNARE

References:

Enkurin

DUF5798

WXG100
11973144 The ESAT-6/WXG100 superfamily -- and a new Gram-positive secretion system?. Trends Microbiol 2002;10:209-212.

Helo_like_N

PTH2
12475929 Orthologs of a novel archaeal and of the bacterial peptidyl-tRNA hydrolase are nonessential in yeast. Proc Natl Acad Sci U S A 2002;99:16707-16712.

DUF2203

T2SSF

Syntaxin
11839791 Characterization of temperature-sensitive mutations in the yeast syntaxin 1 homologues Sso1p and Sso2p, and evidence of a distinct function for Sso1p in sporulation. J Cell Sci 2002;115:409-420.
11157748 t-SNARE dephosphorylation promotes SNARE assembly and exocytosis in yeast. EMBO J 2001;20:411-421.
11224573 Vam3p structure reveals conserved and divergent properties of syntaxins. Nat Struct Biol 2001;8:258-264.
11224554 The taming of the SNARE. Nat Struct Biol 2001;8:186-188.
12072456 Gene overexpression as a tool for identifying new trans-acting factors involved in translation termination in Saccharomyces cerevisiae. Genetics 2002;161:585-594.
11737951 The syntaxins. Genome Biol 2001;2:REVIEWS3012.

Occludin_ELL
8276896 Occludin: a novel integral membrane protein localizing at tight junctions. J Cell Biol 1993;123:1777-1788.
8596958 An RNA polymerase II elongation factor encoded by the human ELL gene. Science 1996;271:1873-1876.
16081103 Structure of the conserved cytoplasmic C-terminal domain of occludin: identification of the ZO-1 binding surface. J Mol Biol. 2005;352:151-164.

SNARE
9096343 A conserved domain is present in different families of vesicular fusion proteins: a new superfamily. Proc Natl Acad Sci U S A 1997;94:3046-3051.

INT_SG_DDX_CT_C

ATPase_2

DUF2383

Syntaxin_2

FadA
16030227 Identification and characterization of a novel adhesin unique to oral fusobacteria. J Bacteriol. 2005;187:5330-5340.

ZapD

Baculo_p24
11602755 Genome sequence of a baculovirus pathogenic for Culex nigripalpus. J Virol 2001;75:11157-11165.
8423444 Immunocytochemical characterization of p24, a baculovirus capsid-associated protein. J Gen Virol 1993;74:103-107.

NOG1_N

Vac_Fusion
2389560 Vaccinia virus induces cell fusion at acid pH and this activity is mediated by the N-terminus of the 14-kDa virus envelope protein. Virology 1990;178:81-91.

DUF1043

Baculo_PEP_N
8176372 Orgyia pseudotsugata baculovirus p10 and polyhedron envelope protein genes: analysis of their relative expression levels and role in polyhedron structure. J Gen Virol 1994;75:1115-1123.

DASH_Dam1
11799062 The mitotic spindle is required for loading of the DASH complex onto the kinetochore. Genes Dev 2002;16:183-197.
15640796 The yeast DASH complex forms closed rings on microtubules. Nat Struct Mol Biol. 2005;12:138-143.
15664196 Formation of a dynamic kinetochore- microtubule interface through assembly of the Dam1 ring complex. Mol Cell. 2005;17:277-290.
15632076 Genetic analysis of the kinetochore DASH complex reveals an antagonistic relationship with the ras/protein kinase A pathway and a novel subunit required for Ask1 association. Mol Cell Biol. 2005;25:767-778.

Domain	Description	Evalue	Bits	GA	Start	End
DUF5798	Family of unknown function (DUF5798)	0.0026	9	27.00	33	89
Syntaxin	Syntaxin	0	233	25.00	35	240
INT_SG_DDX_CT_C	INTS6/SAGE1/DDX26B/CT45 C-terminus	0.00013	12	27.00	39	68
NOG1_N	NOG1 N-terminal helical domain	0.0053	7	22.90	39	89
DUF2203	Uncharacterized conserved protein (DUF2203)	0.0011	10	20.80	39	98
Baculo_p24	Baculovirus P24 capsid protein	0.068	4	21.30	39	84
WXG100	Proteins of 100 residues with WXG	0.003	8	27.00	40	96
DASH_Dam1	DASH complex subunit Dam1	0.0076	7	21.40	40	65
Occludin_ELL	Occludin homology domain	0.024	6	25.30	40	72
Vac_Fusion	Chordopoxvirus fusion protein	0.15	2	21.00	40	60
FadA	Adhesion protein FadA	0.033	5	23.00	41	71
Syntaxin_2	Syntaxin-like protein	0.0005	11	30.50	41	157
DUF1043	Protein of unknown function (DUF1043)	0.021	5	22.40	42	59
Helo_like_N	Fungal N-terminal domain of STAND proteins	0.17	2	27.20	43	67
Enkurin	Calmodulin-binding	0.016	6	23.60	43	89
ZapD	Cell division protein	0.2	2	21.20	44	82
PTH2	Peptidyl-tRNA hydrolase PTH2	0.00034	12	21.10	117	202
WXG100	Proteins of 100 residues with WXG	0.29	2	27.00	132	158
Baculo_p24	Baculovirus P24 capsid protein	0.73	0	21.30	133	181
NOG1_N	NOG1 N-terminal helical domain	0.22	2	22.90	133	160
FadA	Adhesion protein FadA	0.0084	7	23.00	134	157
Occludin_ELL	Occludin homology domain	0.058	5	25.30	136	167
DUF2203	Uncharacterized conserved protein (DUF2203)	0.01	7	20.80	141	229
ATPase_2	ATPase domain predominantly from Archaea	5.7E-05	14	33.20	148	238
DUF2383	Domain of unknown function (DUF2383)	0.00023	12	27.00	175	227
DUF5798	Family of unknown function (DUF5798)	0.033	5	27.00	186	233
T2SSF	Type II secretion system (T2SS), protein F	4.5E-05	14	25.20	187	293
Enkurin	Calmodulin-binding	0.012	7	23.60	188	240
NOG1_N	NOG1 N-terminal helical domain	0.00078	10	22.90	190	228
Helo_like_N	Fungal N-terminal domain of STAND proteins	1.4E-05	15	27.20	201	277
ZapD	Cell division protein	0.002	8	21.20	204	270
Baculo_p24	Baculovirus P24 capsid protein	0.002	8	21.30	205	278
DASH_Dam1	DASH complex subunit Dam1	0.043	4	21.40	207	228
DUF1043	Protein of unknown function (DUF1043)	0.0041	8	22.40	207	272
Occludin_ELL	Occludin homology domain	0.35	2	25.30	209	251
Vac_Fusion	Chordopoxvirus fusion protein	0.0027	8	21.00	215	248
Baculo_PEP_N	Baculovirus polyhedron envelope protein, PEP, N terminus	0.00038	11	21.30	225	281
WXG100	Proteins of 100 residues with WXG	0.99	0	27.00	238	269
SNARE	SNARE domain	1.8E-23	73	30.00	241	293