c2pfam

AT3G04130.1 :

Domain Description Evalue Bits GA Start End
Sigma70_r4_2 Sigma-70, region 4 0.0002 11 21.80 72 96
HTH_24 Winged helix-turn-helix DNA-binding 0.0004 10 21.90 73 97
PAX 'Paired box' domain 0.25 1 21.00 78 99
TPR_15 Tetratricopeptide repeat 0.019 4 26.20 117 151
PPR PPR repeat 0.014 6 25.00 128 150
PPR_long Pentacotripeptide-repeat region of PRORP 0.0056 6 27.00 129 235
PPR_3 Pentatricopeptide repeat domain 0.29 1 25.00 156 200
PPR_2 PPR repeat family 2.4E-05 15 30.00 161 202
PPR PPR repeat 0.0013 9 25.00 162 185
TPR_14 Tetratricopeptide repeat 0.29 2 23.50 164 181
TPR_19 Tetratricopeptide repeat 0.00056 10 25.00 167 216
PPR_1 PPR repeat 0.62 0 23.80 168 180
PPR_3 Pentatricopeptide repeat domain 0.0013 9 25.00 181 231
PPR_2 PPR repeat family 3.5E-11 33 30.00 188 236
PPR PPR repeat 0.0042 8 25.00 192 218
PPR_1 PPR repeat 0.0013 8 23.80 194 213
PPR_long Pentacotripeptide-repeat region of PRORP 2.4E-05 14 27.00 202 282
ATP13 Mitochondrial ATPase expression 0.015 5 26.70 208 249
PPR_1 PPR repeat 3E-11 33 23.80 220 250
PPR_3 Pentatricopeptide repeat domain 7.6E-07 19 25.00 220 269
PPR_2 PPR repeat family 3.9E-14 43 30.00 222 271
PPR PPR repeat 3.4E-09 27 25.00 226 255
PAX 'Paired box' domain 0.0014 9 21.00 229 270
PPR_3 Pentatricopeptide repeat domain 1.9E-09 28 25.00 247 302
PPR_1 PPR repeat 2.3E-05 14 23.80 254 285
PPR_2 PPR repeat family 3.9E-13 39 30.00 257 304
PPR PPR repeat 9.8E-08 22 25.00 260 289
PPR_long Pentacotripeptide-repeat region of PRORP 4E-09 26 27.00 274 351
PPR_3 Pentatricopeptide repeat domain 3.3E-12 36 25.00 281 338
ATP13 Mitochondrial ATPase expression 0.0016 8 26.70 287 321
PPR_1 PPR repeat 3.3E-05 14 23.80 289 321
PPR_2 PPR repeat family 2.3E-10 31 30.00 292 329
PPR PPR repeat 5E-06 17 25.00 295 325
TPR_14 Tetratricopeptide repeat 0.43 2 23.50 302 319
TPR_15 Tetratricopeptide repeat 0.012 5 26.20 305 441
TPR_19 Tetratricopeptide repeat 0.1 3 25.00 306 352
PPR_3 Pentatricopeptide repeat domain 7.9E-10 29 25.00 317 375
PPR_1 PPR repeat 7.2E-12 35 23.80 324 353
PPR_2 PPR repeat family 8.9E-13 38 30.00 327 376
PPR PPR repeat 1.2E-06 19 25.00 332 353
PPR_long Pentacotripeptide-repeat region of PRORP 5.3E-12 35 27.00 332 444
TPR_14 Tetratricopeptide repeat 0.0036 8 23.50 334 353
TPR_4 Tetratricopeptide repeat 0.00035 11 22.00 337 353
PPR_3 Pentatricopeptide repeat domain 7E-08 23 25.00 355 411
PPR_1 PPR repeat 7.8E-10 28 23.80 360 392
PPR_2 PPR repeat family 3.3E-14 43 30.00 364 412
PPR PPR repeat 5.3E-11 32 25.00 366 395
ATP13 Mitochondrial ATPase expression 0.23 1 26.70 370 412
PPR_3 Pentatricopeptide repeat domain 0.00016 12 25.00 387 430
PPR_1 PPR repeat 2.9E-05 14 23.80 397 428
PPR_2 PPR repeat family 2E-11 34 30.00 399 449
PPR PPR repeat 5.7E-05 13 25.00 403 430
PPR_3 Pentatricopeptide repeat domain 0.033 4 25.00 423 470
PPR_long Pentacotripeptide-repeat region of PRORP 2E-05 14 27.00 424 502
PPR_1 PPR repeat 5.4E-09 26 23.80 433 463
PPR_2 PPR repeat family 1.7E-07 21 30.00 436 474
PPR PPR repeat 1.4E-07 22 25.00 438 467
PPR_3 Pentatricopeptide repeat domain 0.0069 7 25.00 459 503
Fe_dep_repr_C Iron dependent repressor, metal binding and dimerisation domain 2.8E-05 14 20.70 466 499

508

Sigma70_r4_2
HTH_24
PAX
TPR_15
PPR
PPR_long
PPR_3
PPR_2
PPR
TPR_14
TPR_19
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR_long
ATP13
PPR_1
PPR_3
PPR_2
PPR
PAX
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
ATP13
PPR_1
PPR_2
PPR
TPR_14
TPR_15
TPR_19
PPR_3
PPR_1
PPR_2
PPR
PPR_long
TPR_14
TPR_4
PPR_3
PPR_1
PPR_2
PPR
ATP13
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_long
PPR_1
PPR_2
PPR
PPR_3
Fe_dep_repr_C

References:

TPR_4

Sigma70_r4_2
11931761 Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol Cell 2002;9:527-539.

PPR_long

TPR_15

TPR_14

PPR_1

PPR_2

HTH_24

PAX
9297966 Pax genes and organogenesis. Bioessays 1997;19:755-765.

PPR_3

ATP13

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Fe_dep_repr_C
7568230 Structures of the apo- and the metal ion-activated forms of the diphtheria tox repressor from Corynebacterium diphtheriae. Proc Natl Acad Sci USA 1995;92:9843-9850.
7743135 Three-dimensional structure of the diphtheria toxin repressor in complex with divalent cation co-repressors. Structure 1995;3:87-100.

TPR_19

Domain	Description	Evalue	Bits	GA	Start	End
Sigma70_r4_2	Sigma-70, region 4	0.0002	11	21.80	72	96
HTH_24	Winged helix-turn-helix DNA-binding	0.0004	10	21.90	73	97
PAX	'Paired box' domain	0.25	1	21.00	78	99
TPR_15	Tetratricopeptide repeat	0.019	4	26.20	117	151
PPR	PPR repeat	0.014	6	25.00	128	150
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0056	6	27.00	129	235
PPR_3	Pentatricopeptide repeat domain	0.29	1	25.00	156	200
PPR_2	PPR repeat family	2.4E-05	15	30.00	161	202
PPR	PPR repeat	0.0013	9	25.00	162	185
TPR_14	Tetratricopeptide repeat	0.29	2	23.50	164	181
TPR_19	Tetratricopeptide repeat	0.00056	10	25.00	167	216
PPR_1	PPR repeat	0.62	0	23.80	168	180
PPR_3	Pentatricopeptide repeat domain	0.0013	9	25.00	181	231
PPR_2	PPR repeat family	3.5E-11	33	30.00	188	236
PPR	PPR repeat	0.0042	8	25.00	192	218
PPR_1	PPR repeat	0.0013	8	23.80	194	213
PPR_long	Pentacotripeptide-repeat region of PRORP	2.4E-05	14	27.00	202	282
ATP13	Mitochondrial ATPase expression	0.015	5	26.70	208	249
PPR_1	PPR repeat	3E-11	33	23.80	220	250
PPR_3	Pentatricopeptide repeat domain	7.6E-07	19	25.00	220	269
PPR_2	PPR repeat family	3.9E-14	43	30.00	222	271
PPR	PPR repeat	3.4E-09	27	25.00	226	255
PAX	'Paired box' domain	0.0014	9	21.00	229	270
PPR_3	Pentatricopeptide repeat domain	1.9E-09	28	25.00	247	302
PPR_1	PPR repeat	2.3E-05	14	23.80	254	285
PPR_2	PPR repeat family	3.9E-13	39	30.00	257	304
PPR	PPR repeat	9.8E-08	22	25.00	260	289
PPR_long	Pentacotripeptide-repeat region of PRORP	4E-09	26	27.00	274	351
PPR_3	Pentatricopeptide repeat domain	3.3E-12	36	25.00	281	338
ATP13	Mitochondrial ATPase expression	0.0016	8	26.70	287	321
PPR_1	PPR repeat	3.3E-05	14	23.80	289	321
PPR_2	PPR repeat family	2.3E-10	31	30.00	292	329
PPR	PPR repeat	5E-06	17	25.00	295	325
TPR_14	Tetratricopeptide repeat	0.43	2	23.50	302	319
TPR_15	Tetratricopeptide repeat	0.012	5	26.20	305	441
TPR_19	Tetratricopeptide repeat	0.1	3	25.00	306	352
PPR_3	Pentatricopeptide repeat domain	7.9E-10	29	25.00	317	375
PPR_1	PPR repeat	7.2E-12	35	23.80	324	353
PPR_2	PPR repeat family	8.9E-13	38	30.00	327	376
PPR	PPR repeat	1.2E-06	19	25.00	332	353
PPR_long	Pentacotripeptide-repeat region of PRORP	5.3E-12	35	27.00	332	444
TPR_14	Tetratricopeptide repeat	0.0036	8	23.50	334	353
TPR_4	Tetratricopeptide repeat	0.00035	11	22.00	337	353
PPR_3	Pentatricopeptide repeat domain	7E-08	23	25.00	355	411
PPR_1	PPR repeat	7.8E-10	28	23.80	360	392
PPR_2	PPR repeat family	3.3E-14	43	30.00	364	412
PPR	PPR repeat	5.3E-11	32	25.00	366	395
ATP13	Mitochondrial ATPase expression	0.23	1	26.70	370	412
PPR_3	Pentatricopeptide repeat domain	0.00016	12	25.00	387	430
PPR_1	PPR repeat	2.9E-05	14	23.80	397	428
PPR_2	PPR repeat family	2E-11	34	30.00	399	449
PPR	PPR repeat	5.7E-05	13	25.00	403	430
PPR_3	Pentatricopeptide repeat domain	0.033	4	25.00	423	470
PPR_long	Pentacotripeptide-repeat region of PRORP	2E-05	14	27.00	424	502
PPR_1	PPR repeat	5.4E-09	26	23.80	433	463
PPR_2	PPR repeat family	1.7E-07	21	30.00	436	474
PPR	PPR repeat	1.4E-07	22	25.00	438	467
PPR_3	Pentatricopeptide repeat domain	0.0069	7	25.00	459	503
Fe_dep_repr_C	Iron dependent repressor, metal binding and dimerisation domain	2.8E-05	14	20.70	466	499