c2pfam

AT3G04210.1 :

Domain Description Evalue Bits GA Start End
TIR TIR domain 0 171 21.20 65 242
TIR_2 TIR domain 7.9E-17 52 28.00 68 160
DUF1863 MTH538 TIR-like domain (DUF1863) 0.00033 11 21.20 103 151
AAA_16 AAA ATPase domain 2.8E-07 21 32.60 240 326
NB-ARC NB-ARC domain 7.2E-24 74 23.50 244 475
ATPase_2 ATPase domain predominantly from Archaea 6.6E-05 13 33.20 247 309
ABC_tran ABC transporter 5.3E-05 14 23.10 256 287
Guanylate_kin Guanylate kinase 0.00026 11 20.60 262 297
AAA_14 AAA domain 0.00044 10 27.00 262 380
NACHT NACHT domain 5.2E-05 13 20.40 263 360
AAA_24 AAA domain 8.6E-05 12 27.00 263 280
AAA_22 AAA domain 3.1E-05 14 27.00 263 356
AAA_18 AAA domain 2.1E-05 15 29.40 264 383
AAA ATPase family associated with various cellular activities (AAA) 4E-06 17 20.80 266 289
AAA_16 AAA ATPase domain 0.13 3 32.60 343 358
TIR TIR domain 0.75 0 21.20 435 496
FdhE Protein involved in formate dehydrogenase formation 0.00012 12 24.10 452 517
SWIRM-assoc_3 SWIRM-associated domain at the C-terminal 0.0021 8 27.00 502 522

531

TIR
TIR_2
DUF1863
AAA_16
NB-ARC
ATPase_2
ABC_tran
Guanylate_kin
AAA_14
NACHT
AAA_24
AAA_22
AAA_18
AAA
AAA_16
TIR
FdhE
SWIRM-assoc_3

References:

AAA_16

AAA_14

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

DUF1863
10964569 Structure-based functional classification of hypothetical protein MTH538 from Methanobacterium thermoautotrophicum. J Mol Biol. 2000;302:189-203.

ATPase_2

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

TIR_2

TIR
9013863 The cloning and characterization of human MyD88: a member of an IL-1 receptor related family. FEBS Lett 1997;402:81-84.
9237759 A human homologue of the Drosophila Toll protein signals activation of adaptive immunity [see comments] Nature 1997;388:394-397.
12186654 Toll-like receptors: a family of pattern-recognition receptors in mammals. Genome Biol 2002;3:REVIEWS3011.

SWIRM-assoc_3

AAA_24

Guanylate_kin
1314905 Refined structure of the complex between guanylate kinase and its substrate GMP at 2.0 A resolution. J Mol Biol 1992;224:1127-1141.

AAA_22

FdhE
2170340 Identification and expression of the Escherichia coli fdhD and fdhE genes, which are involved in the formation of respiratory formate dehydrogenase. J Bacteriol 1990;172:6112-6121.
1648557 Genetic evidence that genes fdhD and fdhE do not control synthesis of formate dehydrogenase-N in Escherichia coli K-12. J Bacteriol 1991;173:4417-4423.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
TIR	TIR domain	0	171	21.20	65	242
TIR_2	TIR domain	7.9E-17	52	28.00	68	160
DUF1863	MTH538 TIR-like domain (DUF1863)	0.00033	11	21.20	103	151
AAA_16	AAA ATPase domain	2.8E-07	21	32.60	240	326
NB-ARC	NB-ARC domain	7.2E-24	74	23.50	244	475
ATPase_2	ATPase domain predominantly from Archaea	6.6E-05	13	33.20	247	309
ABC_tran	ABC transporter	5.3E-05	14	23.10	256	287
Guanylate_kin	Guanylate kinase	0.00026	11	20.60	262	297
AAA_14	AAA domain	0.00044	10	27.00	262	380
NACHT	NACHT domain	5.2E-05	13	20.40	263	360
AAA_24	AAA domain	8.6E-05	12	27.00	263	280
AAA_22	AAA domain	3.1E-05	14	27.00	263	356
AAA_18	AAA domain	2.1E-05	15	29.40	264	383
AAA	ATPase family associated with various cellular activities (AAA)	4E-06	17	20.80	266	289
AAA_16	AAA ATPase domain	0.13	3	32.60	343	358
TIR	TIR domain	0.75	0	21.20	435	496
FdhE	Protein involved in formate dehydrogenase formation	0.00012	12	24.10	452	517
SWIRM-assoc_3	SWIRM-associated domain at the C-terminal	0.0021	8	27.00	502	522