c2pfam

AT3G04340.1 :

Domain Description Evalue Bits GA Start End
DUF5101 Domain of unknown function (DUF5101) 2.2E-06 18 27.00 146 217
ABC_tran ABC transporter 0.021 5 23.10 180 313
Synaptobrevin Synaptobrevin 0.043 4 25.00 230 260
Synaptobrevin Synaptobrevin 0.015 5 25.00 265 292
AAA ATPase family associated with various cellular activities (AAA) 0.48 1 20.80 336 405
DUF815 Protein of unknown function (DUF815) 1.1E-05 15 20.10 780 853
AAA_16 AAA ATPase domain 9.6E-07 19 32.60 809 842
Sigma54_activat Sigma-54 interaction domain 0.00015 11 20.20 813 841
TIP49 TIP49 C-terminus 2.2E-06 17 23.80 816 852
ABC_tran ABC transporter 0.00082 10 23.10 820 872
AAA ATPase family associated with various cellular activities (AAA) 2.1E-33 106 20.80 820 952
AAA_18 AAA domain 7.2E-05 13 29.40 820 970
AAA_28 AAA domain 0.0015 9 27.00 820 851
AAA_23 AAA domain 0.0035 8 27.00 820 838
AAA_22 AAA domain 0.00021 12 27.00 820 853
IPT Isopentenyl transferase 7.7E-05 12 20.00 821 874
AAA_16 AAA ATPase domain 0.4 1 32.60 867 889
AAA_28 AAA domain 0.074 3 27.00 932 978
Peptidase_M41 Peptidase family M41 9.6E-14 42 20.60 1102 1276
AAA_23 AAA domain 0.49 1 27.00 1230 1286

1320

DUF5101
ABC_tran
Synaptobrevin
Synaptobrevin
AAA
DUF815
AAA_16
Sigma54_activat
TIP49
ABC_tran
AAA
AAA_18
AAA_28
AAA_23
AAA_22
IPT
AAA_16
AAA_28
Peptidase_M41
AAA_23

References:

DUF815

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

DUF5101

IPT
1465104 Organization and functional analysis of three T-DNAs from the vitopine Ti plasmid pTiS4. Mol Gen Genet 1992;235:292-303.

Peptidase_M41

Synaptobrevin

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_28

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_23

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
DUF5101	Domain of unknown function (DUF5101)	2.2E-06	18	27.00	146	217
ABC_tran	ABC transporter	0.021	5	23.10	180	313
Synaptobrevin	Synaptobrevin	0.043	4	25.00	230	260
Synaptobrevin	Synaptobrevin	0.015	5	25.00	265	292
AAA	ATPase family associated with various cellular activities (AAA)	0.48	1	20.80	336	405
DUF815	Protein of unknown function (DUF815)	1.1E-05	15	20.10	780	853
AAA_16	AAA ATPase domain	9.6E-07	19	32.60	809	842
Sigma54_activat	Sigma-54 interaction domain	0.00015	11	20.20	813	841
TIP49	TIP49 C-terminus	2.2E-06	17	23.80	816	852
ABC_tran	ABC transporter	0.00082	10	23.10	820	872
AAA	ATPase family associated with various cellular activities (AAA)	2.1E-33	106	20.80	820	952
AAA_18	AAA domain	7.2E-05	13	29.40	820	970
AAA_28	AAA domain	0.0015	9	27.00	820	851
AAA_23	AAA domain	0.0035	8	27.00	820	838
AAA_22	AAA domain	0.00021	12	27.00	820	853
IPT	Isopentenyl transferase	7.7E-05	12	20.00	821	874
AAA_16	AAA ATPase domain	0.4	1	32.60	867	889
AAA_28	AAA domain	0.074	3	27.00	932	978
Peptidase_M41	Peptidase family M41	9.6E-14	42	20.60	1102	1276
AAA_23	AAA domain	0.49	1	27.00	1230	1286