| Domain | Description | Evalue | Bits | GA | Start | End |
| Raf1_HTH | Rubisco accumulation factor 1 helix turn helix domain | 1.6E-24 | 73 | 27.30 | 85 | 142 |
| Raf1_N | Rubisco accumulation factor 1 alpha helical domain | 9.3E-37 | 114 | 26.80 | 155 | 264 |
| RuBisCo_chap_C | Rubisco Assembly chaperone C-terminal domain | 1.3E-37 | 116 | 25.00 | 288 | 435 |