c2pfam

AT3G04750.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 0.00022 10 23.80 97 109
PPR_3 Pentatricopeptide repeat domain 0.00055 9 25.00 98 142
PPR_2 PPR repeat family 3.4E-10 29 30.00 98 142
PPR PPR repeat 0.021 5 25.00 102 114
PPR_long Pentacotripeptide-repeat region of PRORP 0.0015 7 27.00 147 242
TPR_8 Tetratricopeptide repeat 0.032 4 25.70 168 189
PPR PPR repeat 0.00014 11 25.00 168 192
PPR_2 PPR repeat family 0.0032 7 30.00 168 192
PPR_3 Pentatricopeptide repeat domain 0.0011 8 25.00 168 204
PPR_1 PPR repeat 0.42 0 23.80 169 192
TPR_14 Tetratricopeptide repeat 0.01 6 23.50 169 192
TPR_19 Tetratricopeptide repeat 0.14 2 25.00 169 194
PPR_1 PPR repeat 3.1E-05 13 23.80 194 223
PPR_2 PPR repeat family 4.5E-13 38 30.00 195 242
PPR PPR repeat 6.3E-10 28 25.00 199 228
PPR_3 Pentatricopeptide repeat domain 0.046 3 25.00 222 241
PPR_1 PPR repeat 0.7 -1 23.80 226 234
PPR_3 Pentatricopeptide repeat domain 0.00064 9 25.00 268 299
PPR PPR repeat 0.0011 9 25.00 273 299
PPR_2 PPR repeat family 5.5E-05 13 30.00 273 299
PPR_long Pentacotripeptide-repeat region of PRORP 0.035 3 27.00 290 334
PPR_2 PPR repeat family 1.3E-07 21 30.00 299 330
PPR_1 PPR repeat 6.2E-06 15 23.80 299 326
PPR_3 Pentatricopeptide repeat domain 0.03 4 25.00 302 329
PPR PPR repeat 9.2E-09 25 25.00 302 330
TPR_14 Tetratricopeptide repeat 0.23 2 23.50 305 326
TPR_19 Tetratricopeptide repeat 0.13 2 25.00 311 330
TPR_8 Tetratricopeptide repeat 0.094 3 25.70 312 324
PPR_1 PPR repeat 0.013 5 23.80 329 345
PPR_3 Pentatricopeptide repeat domain 0.013 5 25.00 330 376
PPR_2 PPR repeat family 1.2E-06 18 30.00 330 379
PPR PPR repeat 0.00047 10 25.00 332 346
PPR_1 PPR repeat 0.042 3 23.80 364 384
PPR PPR repeat 0.036 4 25.00 369 391
PPR PPR repeat 3E-05 14 25.00 407 428
PPR_2 PPR repeat family 0.00045 10 30.00 408 427
PPR_1 PPR repeat 1.6E-05 14 23.80 408 427
PPR_long Pentacotripeptide-repeat region of PRORP 8.4E-08 21 27.00 418 525
PPR_3 Pentatricopeptide repeat domain 4E-09 26 25.00 432 479
PPR_2 PPR repeat family 1.2E-12 37 30.00 432 480
PPR_1 PPR repeat 0.0009 8 23.80 433 460
PPR PPR repeat 2.7E-09 26 25.00 437 465
TPR_19 Tetratricopeptide repeat 0.44 0 25.00 448 474
PPR_1 PPR repeat 0.031 3 23.80 464 496
PPR PPR repeat 1.1E-05 15 25.00 470 498
PPR_2 PPR repeat family 9.7E-06 15 30.00 474 517
PPR_3 Pentatricopeptide repeat domain 0.075 2 25.00 494 548
PPR_1 PPR repeat 2.3E-08 23 23.80 500 528
PPR_2 PPR repeat family 0.0061 6 30.00 507 527
PPR PPR repeat 5.3E-06 16 25.00 507 529
TPR_19 Tetratricopeptide repeat 0.0041 7 25.00 511 537
TPR_8 Tetratricopeptide repeat 0.061 3 25.70 540 570
TPR_14 Tetratricopeptide repeat 0.37 1 23.50 545 572
TPR_19 Tetratricopeptide repeat 0.2 1 25.00 553 587

661

PPR_1
PPR_3
PPR_2
PPR
PPR_long
TPR_8
PPR
PPR_2
PPR_3
PPR_1
TPR_14
TPR_19
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_3
PPR
PPR_2
PPR_long
PPR_2
PPR_1
PPR_3
PPR
TPR_14
TPR_19
TPR_8
PPR_1
PPR_3
PPR_2
PPR
PPR_1
PPR
PPR
PPR_2
PPR_1
PPR_long
PPR_3
PPR_2
PPR_1
PPR
TPR_19
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_19
TPR_8
TPR_14
TPR_19

References:

TPR_8

TPR_19

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	0.00022	10	23.80	97	109
PPR_3	Pentatricopeptide repeat domain	0.00055	9	25.00	98	142
PPR_2	PPR repeat family	3.4E-10	29	30.00	98	142
PPR	PPR repeat	0.021	5	25.00	102	114
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0015	7	27.00	147	242
TPR_8	Tetratricopeptide repeat	0.032	4	25.70	168	189
PPR	PPR repeat	0.00014	11	25.00	168	192
PPR_2	PPR repeat family	0.0032	7	30.00	168	192
PPR_3	Pentatricopeptide repeat domain	0.0011	8	25.00	168	204
PPR_1	PPR repeat	0.42	0	23.80	169	192
TPR_14	Tetratricopeptide repeat	0.01	6	23.50	169	192
TPR_19	Tetratricopeptide repeat	0.14	2	25.00	169	194
PPR_1	PPR repeat	3.1E-05	13	23.80	194	223
PPR_2	PPR repeat family	4.5E-13	38	30.00	195	242
PPR	PPR repeat	6.3E-10	28	25.00	199	228
PPR_3	Pentatricopeptide repeat domain	0.046	3	25.00	222	241
PPR_1	PPR repeat	0.7	-1	23.80	226	234
PPR_3	Pentatricopeptide repeat domain	0.00064	9	25.00	268	299
PPR	PPR repeat	0.0011	9	25.00	273	299
PPR_2	PPR repeat family	5.5E-05	13	30.00	273	299
PPR_long	Pentacotripeptide-repeat region of PRORP	0.035	3	27.00	290	334
PPR_2	PPR repeat family	1.3E-07	21	30.00	299	330
PPR_1	PPR repeat	6.2E-06	15	23.80	299	326
PPR_3	Pentatricopeptide repeat domain	0.03	4	25.00	302	329
PPR	PPR repeat	9.2E-09	25	25.00	302	330
TPR_14	Tetratricopeptide repeat	0.23	2	23.50	305	326
TPR_19	Tetratricopeptide repeat	0.13	2	25.00	311	330
TPR_8	Tetratricopeptide repeat	0.094	3	25.70	312	324
PPR_1	PPR repeat	0.013	5	23.80	329	345
PPR_3	Pentatricopeptide repeat domain	0.013	5	25.00	330	376
PPR_2	PPR repeat family	1.2E-06	18	30.00	330	379
PPR	PPR repeat	0.00047	10	25.00	332	346
PPR_1	PPR repeat	0.042	3	23.80	364	384
PPR	PPR repeat	0.036	4	25.00	369	391
PPR	PPR repeat	3E-05	14	25.00	407	428
PPR_2	PPR repeat family	0.00045	10	30.00	408	427
PPR_1	PPR repeat	1.6E-05	14	23.80	408	427
PPR_long	Pentacotripeptide-repeat region of PRORP	8.4E-08	21	27.00	418	525
PPR_3	Pentatricopeptide repeat domain	4E-09	26	25.00	432	479
PPR_2	PPR repeat family	1.2E-12	37	30.00	432	480
PPR_1	PPR repeat	0.0009	8	23.80	433	460
PPR	PPR repeat	2.7E-09	26	25.00	437	465
TPR_19	Tetratricopeptide repeat	0.44	0	25.00	448	474
PPR_1	PPR repeat	0.031	3	23.80	464	496
PPR	PPR repeat	1.1E-05	15	25.00	470	498
PPR_2	PPR repeat family	9.7E-06	15	30.00	474	517
PPR_3	Pentatricopeptide repeat domain	0.075	2	25.00	494	548
PPR_1	PPR repeat	2.3E-08	23	23.80	500	528
PPR_2	PPR repeat family	0.0061	6	30.00	507	527
PPR	PPR repeat	5.3E-06	16	25.00	507	529
TPR_19	Tetratricopeptide repeat	0.0041	7	25.00	511	537
TPR_8	Tetratricopeptide repeat	0.061	3	25.70	540	570
TPR_14	Tetratricopeptide repeat	0.37	1	23.50	545	572
TPR_19	Tetratricopeptide repeat	0.2	1	25.00	553	587