c2pfam

AT3G05200.1 :

Domain Description Evalue Bits GA Start End
zf-Nse Zinc-finger of the MIZ type in Nse subunit 1.5E-06 19 20.70 122 169
FANCL_C FANCL C-terminal domain 4.1E-05 14 20.70 125 163
Baculo_RING Baculovirus U-box/Ring-like domain 0.00027 12 21.20 125 168
Prok-RING_1 Prokaryotic RING finger family 1 0.00037 11 29.10 126 156
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 4.3E-07 20 27.00 126 172
zf-RING_5 zinc-RING finger domain 1.3E-08 25 27.90 127 170
zf-RING_2 Ring finger domain 6E-17 52 27.30 127 170
zf-RING_11 RING-like zinc finger 1.2E-13 41 27.00 127 156
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.5E-11 35 27.00 127 169
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 3.3E-06 17 27.30 127 169
Prok-RING_4 Prokaryotic RING finger family 4 5E-06 17 27.00 128 175
RINGv RING-variant domain 9.3E-05 13 21.60 128 169
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 5.1E-10 30 21.00 128 169
zf-RING_UBOX RING-type zinc-finger 7.1E-09 26 25.20 128 167
zf-RING_4 RING/Ubox like zinc-binding domain 0.00073 10 27.00 128 171
PHD PHD-finger 0.001 10 27.90 128 170
zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.0013 10 30.00 128 169
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1E-08 26 21.40 135 173
zf-rbx1 RING-H2 zinc finger domain 3.1E-10 31 31.00 135 170
zinc_ribbon_16 Zinc-ribbon like family 8.9E-05 13 27.00 139 172
zf-RING-like RING-like domain 0.00071 11 21.60 146 169
Zn-ribbon_8 Zinc ribbon domain 0.0013 10 34.40 146 175
Prok-RING_1 Prokaryotic RING finger family 1 0.067 4 29.10 164 175

398

zf-Nse
FANCL_C
Baculo_RING
Prok-RING_1
zf-C3HC4_3
zf-RING_5
zf-RING_2
zf-RING_11
zf-C3HC4_2
Zn_ribbon_17
Prok-RING_4
RINGv
zf-C3HC4
zf-RING_UBOX
zf-RING_4
PHD
zf-C3HC4_4
zf-ANAPC11
zf-rbx1
zinc_ribbon_16
zf-RING-like
Zn-ribbon_8
Prok-RING_1

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

Zn_ribbon_17

Zn-ribbon_8

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

RINGv

Baculo_RING

zf-ANAPC11

zinc_ribbon_16

zf-C3HC4_2

zf-rbx1

zf-RING_5

zf-RING_4

zf-RING_2

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

zf-RING-like

zf-RING_11

zf-C3HC4_4

zf-C3HC4_3

Prok-RING_4

zf-RING_UBOX

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	1.5E-06	19	20.70	122	169
FANCL_C	FANCL C-terminal domain	4.1E-05	14	20.70	125	163
Baculo_RING	Baculovirus U-box/Ring-like domain	0.00027	12	21.20	125	168
Prok-RING_1	Prokaryotic RING finger family 1	0.00037	11	29.10	126	156
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	4.3E-07	20	27.00	126	172
zf-RING_5	zinc-RING finger domain	1.3E-08	25	27.90	127	170
zf-RING_2	Ring finger domain	6E-17	52	27.30	127	170
zf-RING_11	RING-like zinc finger	1.2E-13	41	27.00	127	156
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.5E-11	35	27.00	127	169
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	3.3E-06	17	27.30	127	169
Prok-RING_4	Prokaryotic RING finger family 4	5E-06	17	27.00	128	175
RINGv	RING-variant domain	9.3E-05	13	21.60	128	169
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	5.1E-10	30	21.00	128	169
zf-RING_UBOX	RING-type zinc-finger	7.1E-09	26	25.20	128	167
zf-RING_4	RING/Ubox like zinc-binding domain	0.00073	10	27.00	128	171
PHD	PHD-finger	0.001	10	27.90	128	170
zf-C3HC4_4	zinc finger of C3HC4-type, RING	0.0013	10	30.00	128	169
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1E-08	26	21.40	135	173
zf-rbx1	RING-H2 zinc finger domain	3.1E-10	31	31.00	135	170
zinc_ribbon_16	Zinc-ribbon like family	8.9E-05	13	27.00	139	172
zf-RING-like	RING-like domain	0.00071	11	21.60	146	169
Zn-ribbon_8	Zinc ribbon domain	0.0013	10	34.40	146	175
Prok-RING_1	Prokaryotic RING finger family 1	0.067	4	29.10	164	175