c2pfam

AT3G05240.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 0.0019 8 23.80 69 98
PPR_3 Pentatricopeptide repeat domain 1.2E-05 15 25.00 70 118
PPR_2 PPR repeat family 1.2E-13 41 30.00 70 117
PPR_long Pentacotripeptide-repeat region of PRORP 0.0029 7 27.00 71 157
PPR PPR repeat 2.2E-08 24 25.00 74 102
TPR_2 Tetratricopeptide repeat 0.81 0 22.40 87 100
PPR_3 Pentatricopeptide repeat domain 0.0023 8 25.00 134 167
PPR_2 PPR repeat family 0.04 4 30.00 145 173
PPR PPR repeat 0.03 5 25.00 146 170
PPR_3 Pentatricopeptide repeat domain 0.00054 10 25.00 170 206
PPR_1 PPR repeat 7.5E-07 19 23.80 172 200
PPR_2 PPR repeat family 8.7E-11 32 30.00 172 208
PPR PPR repeat 1.6E-09 27 25.00 174 204
TPR_14 Tetratricopeptide repeat 0.064 4 23.50 175 200
TPR_2 Tetratricopeptide repeat 0.15 2 22.40 185 198
PPR_long Pentacotripeptide-repeat region of PRORP 0.00026 10 27.00 190 332
AEP1 ATPase expression protein 1 0.0023 7 27.00 246 292
PPR_3 Pentatricopeptide repeat domain 0.00015 12 25.00 247 292
PPR_2 PPR repeat family 0.00019 11 30.00 250 280
PPR PPR repeat 1.9E-06 18 25.00 255 280
PPR_1 PPR repeat 5.2E-05 13 23.80 255 277
RPN7 26S proteasome subunit RPN7 0.47 0 25.30 256 277
PPR_1 PPR repeat 2.8E-05 14 23.80 281 308
PPR_3 Pentatricopeptide repeat domain 4.2E-05 13 25.00 282 325
PPR_2 PPR repeat family 8.7E-14 41 30.00 282 326
PPR PPR repeat 2.6E-11 33 25.00 283 313
PPR_long Pentacotripeptide-repeat region of PRORP 0.0072 5 27.00 294 381
PPR_3 Pentatricopeptide repeat domain 0.00083 9 25.00 306 347
PPR_1 PPR repeat 0.11 2 23.80 312 324
PPR PPR repeat 0.032 5 25.00 327 341
RPN7 26S proteasome subunit RPN7 0.0014 8 25.30 330 385
TPR_19 Tetratricopeptide repeat 0.022 5 25.00 350 382
AEP1 ATPase expression protein 1 0.045 2 27.00 353 384
TPR_8 Tetratricopeptide repeat 0.00084 9 25.70 356 377
PPR_3 Pentatricopeptide repeat domain 0.034 4 25.00 356 381
PPR_1 PPR repeat 0.2 1 23.80 357 377
PPR PPR repeat 0.00012 12 25.00 357 381
PPR_2 PPR repeat family 0.0047 7 30.00 357 381
TPR_14 Tetratricopeptide repeat 0.033 5 23.50 357 382
TPR_2 Tetratricopeptide repeat 0.038 4 22.40 361 377
PPR_2 PPR repeat family 1.3E-09 28 30.00 381 429
PPR_1 PPR repeat 0.028 4 23.80 382 409
PPR_3 Pentatricopeptide repeat domain 0.005 7 25.00 383 428
PPR PPR repeat 4.9E-09 26 25.00 385 413
PPR_long Pentacotripeptide-repeat region of PRORP 0.00011 11 27.00 400 484
PPR_3 Pentatricopeptide repeat domain 0.0029 8 25.00 404 460
PPR PPR repeat 0.0003 11 25.00 420 447
PPR_2 PPR repeat family 0.036 4 30.00 428 455
PPR_1 PPR repeat 4.9E-08 22 23.80 450 481
PPR_2 PPR repeat family 0.00017 12 30.00 453 495
PPR PPR repeat 3.4E-06 17 25.00 457 482
TPR_14 Tetratricopeptide repeat 0.014 6 23.50 460 478
TPR_19 Tetratricopeptide repeat 0.011 6 25.00 461 482
TPR_2 Tetratricopeptide repeat 0.2 2 22.40 464 477
TPR_4 Tetratricopeptide repeat 0.0063 7 22.00 464 477
PPR_3 Pentatricopeptide repeat domain 0.071 3 25.00 482 509
PPR_1 PPR repeat 0.59 0 23.80 483 496
PPR_2 PPR repeat family 0.92 0 30.00 485 497
TPR_8 Tetratricopeptide repeat 0.65 0 25.70 523 536
TPR_2 Tetratricopeptide repeat 0.15 2 22.40 524 538
PPR PPR repeat 0.0039 7 25.00 524 551

565

PPR_1
PPR_3
PPR_2
PPR_long
PPR
TPR_2
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_14
TPR_2
PPR_long
AEP1
PPR_3
PPR_2
PPR
PPR_1
RPN7
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
RPN7
TPR_19
AEP1
TPR_8
PPR_3
PPR_1
PPR
PPR_2
TPR_14
TPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_3
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_14
TPR_19
TPR_2
TPR_4
PPR_3
PPR_1
PPR_2
TPR_8
TPR_2
PPR

References:

AEP1

TPR_4

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_14

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	0.0019	8	23.80	69	98
PPR_3	Pentatricopeptide repeat domain	1.2E-05	15	25.00	70	118
PPR_2	PPR repeat family	1.2E-13	41	30.00	70	117
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0029	7	27.00	71	157
PPR	PPR repeat	2.2E-08	24	25.00	74	102
TPR_2	Tetratricopeptide repeat	0.81	0	22.40	87	100
PPR_3	Pentatricopeptide repeat domain	0.0023	8	25.00	134	167
PPR_2	PPR repeat family	0.04	4	30.00	145	173
PPR	PPR repeat	0.03	5	25.00	146	170
PPR_3	Pentatricopeptide repeat domain	0.00054	10	25.00	170	206
PPR_1	PPR repeat	7.5E-07	19	23.80	172	200
PPR_2	PPR repeat family	8.7E-11	32	30.00	172	208
PPR	PPR repeat	1.6E-09	27	25.00	174	204
TPR_14	Tetratricopeptide repeat	0.064	4	23.50	175	200
TPR_2	Tetratricopeptide repeat	0.15	2	22.40	185	198
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00026	10	27.00	190	332
AEP1	ATPase expression protein 1	0.0023	7	27.00	246	292
PPR_3	Pentatricopeptide repeat domain	0.00015	12	25.00	247	292
PPR_2	PPR repeat family	0.00019	11	30.00	250	280
PPR	PPR repeat	1.9E-06	18	25.00	255	280
PPR_1	PPR repeat	5.2E-05	13	23.80	255	277
RPN7	26S proteasome subunit RPN7	0.47	0	25.30	256	277
PPR_1	PPR repeat	2.8E-05	14	23.80	281	308
PPR_3	Pentatricopeptide repeat domain	4.2E-05	13	25.00	282	325
PPR_2	PPR repeat family	8.7E-14	41	30.00	282	326
PPR	PPR repeat	2.6E-11	33	25.00	283	313
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0072	5	27.00	294	381
PPR_3	Pentatricopeptide repeat domain	0.00083	9	25.00	306	347
PPR_1	PPR repeat	0.11	2	23.80	312	324
PPR	PPR repeat	0.032	5	25.00	327	341
RPN7	26S proteasome subunit RPN7	0.0014	8	25.30	330	385
TPR_19	Tetratricopeptide repeat	0.022	5	25.00	350	382
AEP1	ATPase expression protein 1	0.045	2	27.00	353	384
TPR_8	Tetratricopeptide repeat	0.00084	9	25.70	356	377
PPR_3	Pentatricopeptide repeat domain	0.034	4	25.00	356	381
PPR_1	PPR repeat	0.2	1	23.80	357	377
PPR	PPR repeat	0.00012	12	25.00	357	381
PPR_2	PPR repeat family	0.0047	7	30.00	357	381
TPR_14	Tetratricopeptide repeat	0.033	5	23.50	357	382
TPR_2	Tetratricopeptide repeat	0.038	4	22.40	361	377
PPR_2	PPR repeat family	1.3E-09	28	30.00	381	429
PPR_1	PPR repeat	0.028	4	23.80	382	409
PPR_3	Pentatricopeptide repeat domain	0.005	7	25.00	383	428
PPR	PPR repeat	4.9E-09	26	25.00	385	413
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00011	11	27.00	400	484
PPR_3	Pentatricopeptide repeat domain	0.0029	8	25.00	404	460
PPR	PPR repeat	0.0003	11	25.00	420	447
PPR_2	PPR repeat family	0.036	4	30.00	428	455
PPR_1	PPR repeat	4.9E-08	22	23.80	450	481
PPR_2	PPR repeat family	0.00017	12	30.00	453	495
PPR	PPR repeat	3.4E-06	17	25.00	457	482
TPR_14	Tetratricopeptide repeat	0.014	6	23.50	460	478
TPR_19	Tetratricopeptide repeat	0.011	6	25.00	461	482
TPR_2	Tetratricopeptide repeat	0.2	2	22.40	464	477
TPR_4	Tetratricopeptide repeat	0.0063	7	22.00	464	477
PPR_3	Pentatricopeptide repeat domain	0.071	3	25.00	482	509
PPR_1	PPR repeat	0.59	0	23.80	483	496
PPR_2	PPR repeat family	0.92	0	30.00	485	497
TPR_8	Tetratricopeptide repeat	0.65	0	25.70	523	536
TPR_2	Tetratricopeptide repeat	0.15	2	22.40	524	538
PPR	PPR repeat	0.0039	7	25.00	524	551