c2pfam

AT3G05250.1 :

Domain Description Evalue Bits GA Start End
Prok-RING_4 Prokaryotic RING finger family 4 0.02 5 27.00 15 26
FYVE FYVE zinc finger 7.4E-05 13 26.80 17 73
zinc_ribbon_9 zinc-ribbon 0.00068 10 30.80 17 32
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 3.7E-07 20 27.00 20 73
zf-Nse Zinc-finger of the MIZ type in Nse subunit 0.00018 12 20.70 21 70
zf-RING_5 zinc-RING finger domain 2.2E-06 18 27.90 22 72
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.1E-06 19 27.00 22 52
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 7.3E-13 38 21.00 22 70
zf-RING_2 Ring finger domain 9.5E-11 32 27.30 22 71
zf-RING_UBOX RING-type zinc-finger 2.2E-08 24 25.20 22 68
zf-C3HC4_4 zinc finger of C3HC4-type, RING 4.1E-07 20 30.00 22 70
Prok-RING_4 Prokaryotic RING finger family 4 0.069 3 27.00 34 73
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 0.00055 10 21.40 35 72
zf-C3HC4_5 Zinc finger, C3HC4 type (RING finger) 0.03 4 27.00 36 48
zf-rbx1 RING-H2 zinc finger domain 4E-05 14 31.00 36 71
DUF1244 Protein of unknown function (DUF1244) 0.0015 9 21.20 41 58
zinc_ribbon_9 zinc-ribbon 0.029 5 30.80 42 71
zf-C3HC4_5 Zinc finger, C3HC4 type (RING finger) 0.061 3 27.00 66 73
zf-rbx1 RING-H2 zinc finger domain 0.51 1 31.00 139 147
zf-RING_2 Ring finger domain 0.79 0 27.30 139 147

278

Prok-RING_4
FYVE
zinc_ribbon_9
zf-C3HC4_3
zf-Nse
zf-RING_5
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
Prok-RING_4
zf-ANAPC11
zf-C3HC4_5
zf-rbx1
DUF1244
zinc_ribbon_9
zf-C3HC4_5
zf-rbx1
zf-RING_2

References:

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-C3HC4_2

DUF1244

FYVE
8798641 Endosomal localization of the autoantigen EEA1 is mediated by a zinc-binding FYVE finger. J Biol Chem 1996;271:24048-24054.
9697764 FYVE fingers bind PtdIns(3)P. Nature 1998;394:432-433.
10564636 FYVE-finger proteins - effectors of an inositol lipid. J Cell Sci 1999;112:4175-4183.

zinc_ribbon_9

zf-ANAPC11

zf-RING_UBOX

zf-RING_5

zf-RING_2

zf-rbx1

zf-C3HC4_5

zf-C3HC4_4

zf-C3HC4_3

Prok-RING_4

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

Domain	Description	Evalue	Bits	GA	Start	End
Prok-RING_4	Prokaryotic RING finger family 4	0.02	5	27.00	15	26
FYVE	FYVE zinc finger	7.4E-05	13	26.80	17	73
zinc_ribbon_9	zinc-ribbon	0.00068	10	30.80	17	32
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	3.7E-07	20	27.00	20	73
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	0.00018	12	20.70	21	70
zf-RING_5	zinc-RING finger domain	2.2E-06	18	27.90	22	72
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.1E-06	19	27.00	22	52
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	7.3E-13	38	21.00	22	70
zf-RING_2	Ring finger domain	9.5E-11	32	27.30	22	71
zf-RING_UBOX	RING-type zinc-finger	2.2E-08	24	25.20	22	68
zf-C3HC4_4	zinc finger of C3HC4-type, RING	4.1E-07	20	30.00	22	70
Prok-RING_4	Prokaryotic RING finger family 4	0.069	3	27.00	34	73
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	0.00055	10	21.40	35	72
zf-C3HC4_5	Zinc finger, C3HC4 type (RING finger)	0.03	4	27.00	36	48
zf-rbx1	RING-H2 zinc finger domain	4E-05	14	31.00	36	71
DUF1244	Protein of unknown function (DUF1244)	0.0015	9	21.20	41	58
zinc_ribbon_9	zinc-ribbon	0.029	5	30.80	42	71
zf-C3HC4_5	Zinc finger, C3HC4 type (RING finger)	0.061	3	27.00	66	73
zf-rbx1	RING-H2 zinc finger domain	0.51	1	31.00	139	147
zf-RING_2	Ring finger domain	0.79	0	27.30	139	147