c2pfam

AT3G05310.1 :

Domain Description Evalue Bits GA Start End
DAP3 Mitochondrial ribosomal death-associated protein 3 0.0017 9 23.10 9 33
Zeta_toxin Zeta toxin 0.00037 11 20.10 12 37
Arf ADP-ribosylation factor family 0.065 4 20.30 12 45
G-alpha G-protein alpha subunit 0.036 4 20.10 13 31
IIGP Interferon-inducible GTPase (IIGP) 0.0021 8 19.60 13 33
AAA_24 AAA domain 0.0026 9 27.00 14 35
Septin Septin 0.035 4 20.00 15 33
TniB Bacterial TniB protein 0.067 4 20.10 15 120
AAA_16 AAA ATPase domain 0.00023 13 32.60 15 36
Ras Ras family 7.4E-11 33 20.80 16 149
MMR_HSR1 GTPase of unknown function 5.1E-05 14 24.50 16 93
Roc Ras of Complex, Roc, domain of DAPkinase 1.8E-06 19 27.00 16 128
ABC_tran ABC transporter 0.00081 11 23.10 16 36
FtsK_SpoIIIE FtsK/SpoIIIE family 0.0072 7 21.20 16 33
FeoB_N Ferrous iron transport protein B 0.21 2 21.20 16 34
AAA_22 AAA domain 0.0045 8 27.00 17 36
RNA_helicase RNA helicase 0.035 6 21.50 17 33
AAA_14 AAA domain 0.1 4 27.00 17 39
AAA_29 P-loop containing region of AAA domain 0.00052 11 27.00 17 33
RsgA_GTPase RsgA GTPase 0.025 6 30.00 17 33
ATPase_2 ATPase domain predominantly from Archaea 0.013 6 33.20 17 38
Dynamin_N Dynamin family 0.00078 11 21.00 17 44
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0052 8 27.00 18 153
RsgA_GTPase RsgA GTPase 0.066 4 30.00 81 156
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 0.017 7 21.40 131 170
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 0.0029 9 21.40 189 236
EF-hand_7 EF-hand domain pair 0.016 7 30.00 199 229
EF-hand_6 EF-hand domain 0.039 5 25.00 200 221
EF-hand_1 EF hand 0.0035 8 25.40 200 225
EF-hand_5 EF hand 0.0021 9 25.90 208 223
EF_assoc_2 EF hand associated 1.2E-27 87 21.50 230 315
EF-hand_1 EF hand 0.0022 9 25.40 321 346
EF-hand_6 EF-hand domain 0.00096 10 25.00 321 346
EF-hand_7 EF-hand domain pair 0.018 7 30.00 321 355
EF-hand_5 EF hand 0.082 4 25.90 327 341
EF_assoc_1 EF hand associated 2.4E-21 66 19.10 353 421
FtsK_SpoIIIE FtsK/SpoIIIE family 0.13 3 21.20 413 448
Zeta_toxin Zeta toxin 0.062 4 20.10 414 450
G-alpha G-protein alpha subunit 0.011 6 20.10 417 456
DAP3 Mitochondrial ribosomal death-associated protein 3 0.011 6 23.10 419 449
IIGP Interferon-inducible GTPase (IIGP) 0.23 1 19.60 421 451
Arf ADP-ribosylation factor family 0.032 5 20.30 422 448
TniB Bacterial TniB protein 0.00022 12 20.10 423 474
AAA_16 AAA ATPase domain 0.031 6 32.60 428 448
ATPase_2 ATPase domain predominantly from Archaea 1.5E-06 19 33.20 428 455
AAA_29 P-loop containing region of AAA domain 0.041 5 27.00 429 444
AAA_24 AAA domain 0.23 2 27.00 429 447
FeoB_N Ferrous iron transport protein B 0.0065 7 21.20 430 464
RsgA_GTPase RsgA GTPase 0.058 4 30.00 430 450
MMR_HSR1 GTPase of unknown function 5.4E-08 24 24.50 430 524
Ras Ras family 7.6E-08 23 20.80 431 595
Septin Septin 0.019 5 20.00 431 487
RNA_helicase RNA helicase 0.024 6 21.50 431 451
AAA_22 AAA domain 0.18 3 27.00 431 448
AAA_14 AAA domain 0.0016 10 27.00 431 453
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.3 2 27.00 432 525
Roc Ras of Complex, Roc, domain of DAPkinase 0.00049 11 27.00 432 515
Dynamin_N Dynamin family 0.00022 12 21.00 432 454
ABC_tran ABC transporter 0.045 5 23.10 432 455
Arf ADP-ribosylation factor family 0.2 2 20.30 505 555
CwsA Cell wall synthesis protein CwsA 0.00054 11 26.70 587 644

648

DAP3
Zeta_toxin
Arf
G-alpha
IIGP
AAA_24
Septin
TniB
AAA_16
Ras
MMR_HSR1
Roc
ABC_tran
FtsK_SpoIIIE
FeoB_N
AAA_22
RNA_helicase
AAA_14
AAA_29
RsgA_GTPase
ATPase_2
Dynamin_N
AAA_21
RsgA_GTPase
SPARC_Ca_bdg
SPARC_Ca_bdg
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
EF_assoc_2
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_5
EF_assoc_1
FtsK_SpoIIIE
Zeta_toxin
G-alpha
DAP3
IIGP
Arf
TniB
AAA_16
ATPase_2
AAA_29
AAA_24
FeoB_N
RsgA_GTPase
MMR_HSR1
Ras
Septin
RNA_helicase
AAA_22
AAA_14
AAA_21
Roc
Dynamin_N
ABC_tran
Arf
CwsA

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

EF-hand_7

RsgA_GTPase

EF-hand_5

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

EF-hand_1

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

SPARC_Ca_bdg
16121393 The C-terminal Ca2+-binding domain of SPARC confers anti-spreading activity to human urothelial cells. J Cell Physiol. 2006;206:211-220.

IIGP
11907101 The IFN-inducible Golgi- and endoplasmic reticulum- associated 47-kDa GTPase IIGP is transiently expressed during listeriosis. J Immunol 2002;168:3428-3436.

Septin
12665577 Molecular dissection of a yeast septin: distinct domains are required for septin interaction, localization, and function. Mol Cell Biol 2003;23:2762-2777.
14611653 The septins. Genome Biol 2003;4:236.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

G-alpha
8073283 Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis. Science 1994;265:1405-1412.
8851656 How G proteins work: a continuing story. Trends Biochem Sci 1996;21:41-44.

ATPase_2

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

FeoB_N
8407793 Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 1993;175:6212-6219.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Roc

CwsA

EF_assoc_1
15218247 Cloning and characterization of the mouse Arht2 gene which encodes a putative atypical GTPase. Cytogenet Genome Res 2004;106:91-97.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

AAA_29

AAA_24

EF-hand_6

AAA_22

AAA_21

AAA_16

AAA_14

EF_assoc_2

DAP3
9889192 Structure-function analysis of an evolutionary conserved protein, DAP3, which mediates TNF-alpha- and Fas-induced cell death. EMBO J. 1999;18:353-362.
11017876 The apoptosis mediator mDAP-3 is a novel member of a conserved family of mitochondrial proteins. J Cell Sci. 2000;113:3603-3612.

FtsK_SpoIIIE
7592387 A new Escherichia coli cell division gene, ftsK. J Bacteriol 1995;177:6211-6222.
8160014 Bacillus subtilis spoIIIE protein required for DNA segregation during asymmetric cell division. Science 1994;264:572-575.

Domain	Description	Evalue	Bits	GA	Start	End
DAP3	Mitochondrial ribosomal death-associated protein 3	0.0017	9	23.10	9	33
Zeta_toxin	Zeta toxin	0.00037	11	20.10	12	37
Arf	ADP-ribosylation factor family	0.065	4	20.30	12	45
G-alpha	G-protein alpha subunit	0.036	4	20.10	13	31
IIGP	Interferon-inducible GTPase (IIGP)	0.0021	8	19.60	13	33
AAA_24	AAA domain	0.0026	9	27.00	14	35
Septin	Septin	0.035	4	20.00	15	33
TniB	Bacterial TniB protein	0.067	4	20.10	15	120
AAA_16	AAA ATPase domain	0.00023	13	32.60	15	36
Ras	Ras family	7.4E-11	33	20.80	16	149
MMR_HSR1	GTPase of unknown function	5.1E-05	14	24.50	16	93
Roc	Ras of Complex, Roc, domain of DAPkinase	1.8E-06	19	27.00	16	128
ABC_tran	ABC transporter	0.00081	11	23.10	16	36
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.0072	7	21.20	16	33
FeoB_N	Ferrous iron transport protein B	0.21	2	21.20	16	34
AAA_22	AAA domain	0.0045	8	27.00	17	36
RNA_helicase	RNA helicase	0.035	6	21.50	17	33
AAA_14	AAA domain	0.1	4	27.00	17	39
AAA_29	P-loop containing region of AAA domain	0.00052	11	27.00	17	33
RsgA_GTPase	RsgA GTPase	0.025	6	30.00	17	33
ATPase_2	ATPase domain predominantly from Archaea	0.013	6	33.20	17	38
Dynamin_N	Dynamin family	0.00078	11	21.00	17	44
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0052	8	27.00	18	153
RsgA_GTPase	RsgA GTPase	0.066	4	30.00	81	156
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	0.017	7	21.40	131	170
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	0.0029	9	21.40	189	236
EF-hand_7	EF-hand domain pair	0.016	7	30.00	199	229
EF-hand_6	EF-hand domain	0.039	5	25.00	200	221
EF-hand_1	EF hand	0.0035	8	25.40	200	225
EF-hand_5	EF hand	0.0021	9	25.90	208	223
EF_assoc_2	EF hand associated	1.2E-27	87	21.50	230	315
EF-hand_1	EF hand	0.0022	9	25.40	321	346
EF-hand_6	EF-hand domain	0.00096	10	25.00	321	346
EF-hand_7	EF-hand domain pair	0.018	7	30.00	321	355
EF-hand_5	EF hand	0.082	4	25.90	327	341
EF_assoc_1	EF hand associated	2.4E-21	66	19.10	353	421
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.13	3	21.20	413	448
Zeta_toxin	Zeta toxin	0.062	4	20.10	414	450
G-alpha	G-protein alpha subunit	0.011	6	20.10	417	456
DAP3	Mitochondrial ribosomal death-associated protein 3	0.011	6	23.10	419	449
IIGP	Interferon-inducible GTPase (IIGP)	0.23	1	19.60	421	451
Arf	ADP-ribosylation factor family	0.032	5	20.30	422	448
TniB	Bacterial TniB protein	0.00022	12	20.10	423	474
AAA_16	AAA ATPase domain	0.031	6	32.60	428	448
ATPase_2	ATPase domain predominantly from Archaea	1.5E-06	19	33.20	428	455
AAA_29	P-loop containing region of AAA domain	0.041	5	27.00	429	444
AAA_24	AAA domain	0.23	2	27.00	429	447
FeoB_N	Ferrous iron transport protein B	0.0065	7	21.20	430	464
RsgA_GTPase	RsgA GTPase	0.058	4	30.00	430	450
MMR_HSR1	GTPase of unknown function	5.4E-08	24	24.50	430	524
Ras	Ras family	7.6E-08	23	20.80	431	595
Septin	Septin	0.019	5	20.00	431	487
RNA_helicase	RNA helicase	0.024	6	21.50	431	451
AAA_22	AAA domain	0.18	3	27.00	431	448
AAA_14	AAA domain	0.0016	10	27.00	431	453
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.3	2	27.00	432	525
Roc	Ras of Complex, Roc, domain of DAPkinase	0.00049	11	27.00	432	515
Dynamin_N	Dynamin family	0.00022	12	21.00	432	454
ABC_tran	ABC transporter	0.045	5	23.10	432	455
Arf	ADP-ribosylation factor family	0.2	2	20.30	505	555
CwsA	Cell wall synthesis protein CwsA	0.00054	11	26.70	587	644