c2pfam

AT3G05340.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.00058 10 25.00 90 129
PPR_1 PPR repeat 3.5E-08 23 23.80 91 116
PPR PPR repeat 9E-11 31 25.00 91 120
PPR_2 PPR repeat family 9.9E-09 25 30.00 91 119
TPR_14 Tetratricopeptide repeat 0.33 2 23.50 93 115
RPN7 26S proteasome subunit RPN7 0.021 4 25.30 94 123
TPR_7 Tetratricopeptide repeat 0.29 1 27.90 97 115
PPR_2 PPR repeat family 0.00015 12 30.00 120 165
PPR PPR repeat 0.0054 7 25.00 125 151
PPR PPR repeat 0.0059 7 25.00 194 220
PPR_2 PPR repeat family 0.16 2 30.00 194 221
PPR_2 PPR repeat family 4E-10 29 30.00 219 265
PPR_1 PPR repeat 0.028 4 23.80 219 247
PPR_3 Pentatricopeptide repeat domain 0.00034 10 25.00 220 267
PPR_long Pentacotripeptide-repeat region of PRORP 0.0049 6 27.00 223 324
PPR PPR repeat 8.1E-05 12 25.00 223 249
PPR_1 PPR repeat 0.38 0 23.80 252 259
PPR PPR repeat 0.0003 11 25.00 295 315
RPN7 26S proteasome subunit RPN7 0.034 3 25.30 295 319
PPR_2 PPR repeat family 0.0054 7 30.00 296 315
PPR_1 PPR repeat 0.14 2 23.80 296 315
PPR_3 Pentatricopeptide repeat domain 0.054 3 25.00 319 354
PPR_2 PPR repeat family 9.6E-06 15 30.00 321 360
PPR PPR repeat 4.9E-06 16 25.00 323 353
PPR_long Pentacotripeptide-repeat region of PRORP 0.43 -1 27.00 329 368
PPR_1 PPR repeat 0.08 2 23.80 330 348
TPR_14 Tetratricopeptide repeat 0.56 1 23.50 332 352
TPR_7 Tetratricopeptide repeat 0.79 0 27.90 339 352
PPR_3 Pentatricopeptide repeat domain 0.054 3 25.00 389 422
PPR_2 PPR repeat family 0.0018 8 30.00 391 422
TPR_19 Tetratricopeptide repeat 0.88 0 25.00 395 422
PPR PPR repeat 8.2E-06 16 25.00 396 422
PPR_1 PPR repeat 0.0011 8 23.80 396 418
RPN7 26S proteasome subunit RPN7 0.43 0 25.30 398 418
PPR_1 PPR repeat 0.00016 11 23.80 422 450
PPR_3 Pentatricopeptide repeat domain 3.9E-06 16 25.00 422 468
PPR_2 PPR repeat family 4.1E-14 42 30.00 422 469
PPR PPR repeat 1.2E-09 28 25.00 424 450
PPR_long Pentacotripeptide-repeat region of PRORP 3.2E-06 16 27.00 441 511
TPR_19 Tetratricopeptide repeat 0.28 1 25.00 441 484
PPR_3 Pentatricopeptide repeat domain 3.1E-08 23 25.00 445 505
PPR_1 PPR repeat 7.1E-05 12 23.80 454 485
PPR PPR repeat 3.1E-07 20 25.00 459 486
PPR_2 PPR repeat family 2.9E-05 14 30.00 464 504
PPR_1 PPR repeat 2E-06 17 23.80 489 518
PPR_2 PPR repeat family 0.014 5 30.00 496 518
PPR PPR repeat 3.9E-05 13 25.00 496 518
TPR_19 Tetratricopeptide repeat 0.78 0 25.00 507 532
TPR_14 Tetratricopeptide repeat 0.025 5 23.50 528 567
PPR PPR repeat 0.79 0 25.00 529 543
TPR_19 Tetratricopeptide repeat 0.012 6 25.00 548 578
TPR_7 Tetratricopeptide repeat 0.024 5 27.90 564 578
PPR PPR repeat 0.27 1 25.00 568 591
PPR_2 PPR repeat family 0.83 -1 30.00 568 591
DYW_deaminase DYW family of nucleic acid deaminases 3.3E-08 23 31.60 596 654

658

PPR_3
PPR_1
PPR
PPR_2
TPR_14
RPN7
TPR_7
PPR_2
PPR
PPR
PPR_2
PPR_2
PPR_1
PPR_3
PPR_long
PPR
PPR_1
PPR
RPN7
PPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_1
TPR_14
TPR_7
PPR_3
PPR_2
TPR_19
PPR
PPR_1
RPN7
PPR_1
PPR_3
PPR_2
PPR
PPR_long
TPR_19
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
TPR_19
TPR_14
PPR
TPR_19
TPR_7
PPR
PPR_2
DYW_deaminase

References:

TPR_7

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_19

DYW_deaminase

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.00058	10	25.00	90	129
PPR_1	PPR repeat	3.5E-08	23	23.80	91	116
PPR	PPR repeat	9E-11	31	25.00	91	120
PPR_2	PPR repeat family	9.9E-09	25	30.00	91	119
TPR_14	Tetratricopeptide repeat	0.33	2	23.50	93	115
RPN7	26S proteasome subunit RPN7	0.021	4	25.30	94	123
TPR_7	Tetratricopeptide repeat	0.29	1	27.90	97	115
PPR_2	PPR repeat family	0.00015	12	30.00	120	165
PPR	PPR repeat	0.0054	7	25.00	125	151
PPR	PPR repeat	0.0059	7	25.00	194	220
PPR_2	PPR repeat family	0.16	2	30.00	194	221
PPR_2	PPR repeat family	4E-10	29	30.00	219	265
PPR_1	PPR repeat	0.028	4	23.80	219	247
PPR_3	Pentatricopeptide repeat domain	0.00034	10	25.00	220	267
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0049	6	27.00	223	324
PPR	PPR repeat	8.1E-05	12	25.00	223	249
PPR_1	PPR repeat	0.38	0	23.80	252	259
PPR	PPR repeat	0.0003	11	25.00	295	315
RPN7	26S proteasome subunit RPN7	0.034	3	25.30	295	319
PPR_2	PPR repeat family	0.0054	7	30.00	296	315
PPR_1	PPR repeat	0.14	2	23.80	296	315
PPR_3	Pentatricopeptide repeat domain	0.054	3	25.00	319	354
PPR_2	PPR repeat family	9.6E-06	15	30.00	321	360
PPR	PPR repeat	4.9E-06	16	25.00	323	353
PPR_long	Pentacotripeptide-repeat region of PRORP	0.43	-1	27.00	329	368
PPR_1	PPR repeat	0.08	2	23.80	330	348
TPR_14	Tetratricopeptide repeat	0.56	1	23.50	332	352
TPR_7	Tetratricopeptide repeat	0.79	0	27.90	339	352
PPR_3	Pentatricopeptide repeat domain	0.054	3	25.00	389	422
PPR_2	PPR repeat family	0.0018	8	30.00	391	422
TPR_19	Tetratricopeptide repeat	0.88	0	25.00	395	422
PPR	PPR repeat	8.2E-06	16	25.00	396	422
PPR_1	PPR repeat	0.0011	8	23.80	396	418
RPN7	26S proteasome subunit RPN7	0.43	0	25.30	398	418
PPR_1	PPR repeat	0.00016	11	23.80	422	450
PPR_3	Pentatricopeptide repeat domain	3.9E-06	16	25.00	422	468
PPR_2	PPR repeat family	4.1E-14	42	30.00	422	469
PPR	PPR repeat	1.2E-09	28	25.00	424	450
PPR_long	Pentacotripeptide-repeat region of PRORP	3.2E-06	16	27.00	441	511
TPR_19	Tetratricopeptide repeat	0.28	1	25.00	441	484
PPR_3	Pentatricopeptide repeat domain	3.1E-08	23	25.00	445	505
PPR_1	PPR repeat	7.1E-05	12	23.80	454	485
PPR	PPR repeat	3.1E-07	20	25.00	459	486
PPR_2	PPR repeat family	2.9E-05	14	30.00	464	504
PPR_1	PPR repeat	2E-06	17	23.80	489	518
PPR_2	PPR repeat family	0.014	5	30.00	496	518
PPR	PPR repeat	3.9E-05	13	25.00	496	518
TPR_19	Tetratricopeptide repeat	0.78	0	25.00	507	532
TPR_14	Tetratricopeptide repeat	0.025	5	23.50	528	567
PPR	PPR repeat	0.79	0	25.00	529	543
TPR_19	Tetratricopeptide repeat	0.012	6	25.00	548	578
TPR_7	Tetratricopeptide repeat	0.024	5	27.90	564	578
PPR	PPR repeat	0.27	1	25.00	568	591
PPR_2	PPR repeat family	0.83	-1	30.00	568	591
DYW_deaminase	DYW family of nucleic acid deaminases	3.3E-08	23	31.60	596	654