c2pfam

AT3G05790.1 :

Domain Description Evalue Bits GA Start End
LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain 1.5E-35 113 28.70 80 299
AAA_2 AAA domain (Cdc48 subfamily) 1 0 20.60 128 156
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 0.35 1 21.70 172 338
AAA_PrkA PrkA AAA domain 1.2E-07 21 19.70 415 475
RuvB_N Holliday junction DNA helicase ruvB N-terminus 2.8E-05 14 20.00 422 478
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 4.3E-05 14 26.60 447 474
ABC_tran ABC transporter 0.00076 10 23.10 447 474
AAA_16 AAA ATPase domain 2E-06 18 32.60 447 483
AAA_22 AAA domain 2.6E-05 15 27.00 448 528
AAA_14 AAA domain 3.3E-05 14 27.00 449 528
AAA_23 AAA domain 0.0003 12 27.00 449 474
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 0.0025 8 21.70 451 479
AAA_18 AAA domain 3.2E-05 15 29.40 452 474
RNA_helicase RNA helicase 0.0003 11 21.50 452 499
AAA_5 AAA domain (dynein-related subfamily) 1.8E-07 21 20.80 452 528
AAA_2 AAA domain (Cdc48 subfamily) 1E-07 22 20.60 452 577
AAA ATPase family associated with various cellular activities (AAA) 3.1E-22 70 20.80 452 591
Lon_C Lon protease (S16) C-terminal proteolytic domain 0 255 20.50 734 938
ChlI Subunit ChlI of Mg-chelatase 1.9E-08 24 27.00 786 907

942

LON_substr_bdg
AAA_2
CbiA
AAA_PrkA
RuvB_N
TsaE
ABC_tran
AAA_16
AAA_22
AAA_14
AAA_23
CbiA
AAA_18
RNA_helicase
AAA_5
AAA_2
AAA
Lon_C
ChlI

References:

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

TsaE

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

CbiA
9742225 Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon. Biochem J 1998;335:159-166.
9742226 Cobalamin (vitamin B12) biosynthesis: functional characterization of the Bacillus megaterium cbi genes required to convert uroporphyrinogen III into cobyrinic acid a,c-diamide. Biochem J 1998;335:167-173.
7635831 Identification and sequence analysis of genes involved in late steps in cobalamin (vitamin B12) synthesis in Rhodobacter capsulatus. J Bacteriol 1995;177:4481-4487.
8501034 Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J Bacteriol 1993;175:3303-3316.
10966576 The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase. Proteins 2000;41:238-247.
2149583 A family of ATPases involved in active partitioning of diverse bacterial plasmids. Mol Microbiol 1990;4:1455-1463.

ChlI

AAA_PrkA
8626065 Cloning and characterization of the Bacillus subtilis prkA gene encoding a novel serine protein kinase. Gene 1996;168:55-60.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Lon_C
12208506 Domain structure and ATP-induced conformational changes in Escherichia coli protease Lon revealed by limited proteolysis and autolysis. FEBS Lett 2002;526:66-70.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

LON_substr_bdg

AAA_23

AAA_22

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	1.5E-35	113	28.70	80	299
AAA_2	AAA domain (Cdc48 subfamily)	1	0	20.60	128	156
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	0.35	1	21.70	172	338
AAA_PrkA	PrkA AAA domain	1.2E-07	21	19.70	415	475
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	2.8E-05	14	20.00	422	478
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	4.3E-05	14	26.60	447	474
ABC_tran	ABC transporter	0.00076	10	23.10	447	474
AAA_16	AAA ATPase domain	2E-06	18	32.60	447	483
AAA_22	AAA domain	2.6E-05	15	27.00	448	528
AAA_14	AAA domain	3.3E-05	14	27.00	449	528
AAA_23	AAA domain	0.0003	12	27.00	449	474
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	0.0025	8	21.70	451	479
AAA_18	AAA domain	3.2E-05	15	29.40	452	474
RNA_helicase	RNA helicase	0.0003	11	21.50	452	499
AAA_5	AAA domain (dynein-related subfamily)	1.8E-07	21	20.80	452	528
AAA_2	AAA domain (Cdc48 subfamily)	1E-07	22	20.60	452	577
AAA	ATPase family associated with various cellular activities (AAA)	3.1E-22	70	20.80	452	591
Lon_C	Lon protease (S16) C-terminal proteolytic domain	0	255	20.50	734	938
ChlI	Subunit ChlI of Mg-chelatase	1.9E-08	24	27.00	786	907