c2pfam

AT3G06400.1 :

Domain Description Evalue Bits GA Start End
Opi1 Transcription factor Opi1 0.0014 8 20.10 11 126
DBINO DNA-binding domain 2.1E-07 21 22.90 81 133
ResIII Type III restriction enzyme, res subunit 1.9E-11 34 20.90 188 348
SNF2_N SNF2 family N-terminal domain 0 246 20.10 202 469
DEAD DEAD/DEAH box helicase 4.4E-08 23 20.60 206 325
AAA_14 AAA domain 0.00026 11 27.00 310 351
HDA2-3 Class II histone deacetylase complex subunits 2 and 3 4.1E-06 16 20.20 482 547
Helicase_C Helicase conserved C-terminal domain 4.3E-21 65 20.90 492 604
DUF1509 Protein of unknown function (DUF1509) 0.00013 11 20.30 646 753
Opi1 Transcription factor Opi1 0.0061 6 20.10 658 695
HAND HAND 6.7E-10 30 21.00 754 806
DUF1086 Domain of Unknown Function (DUF1086) 4.6E-05 13 25.00 840 888
Myb_DNA-binding Myb-like DNA-binding domain 4.4E-06 17 24.40 843 882
SLIDE SLIDE 0 142 20.80 897 1007
Myb_DNA-binding Myb-like DNA-binding domain 0.0057 7 24.40 948 971
DBINO DNA-binding domain 0.48 1 22.90 985 1020

1055

Opi1
DBINO
ResIII
SNF2_N
DEAD
AAA_14
HDA2-3
Helicase_C
DUF1509
Opi1
HAND
DUF1086
Myb_DNA-binding
SLIDE
Myb_DNA-binding
DBINO

References:

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

AAA_14

SLIDE
14536084 Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI. Mol Cell. 2003;12:449-460.

Opi1
16407309 Casein kinase II phosphorylation of the yeast phospholipid synthesis transcription factor Opi1p. J Biol Chem. 2006; [Epub ahead of print]
1985968 The OPI1 gene of Saccharomyces cerevisiae, a negative regulator of phospholipid biosynthesis, encodes a protein containing polyglutamine tracts and a leucine zipper. J Biol Chem. 1991;266:863-872.

SNF2_N

ResIII

Helicase_C

DUF1509

Myb_DNA-binding
8882580 The SANT domain: a putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB. Trends Biochem Sci 1996;21:87-88.

DBINO

HDA2-3
11287668 HDA2 and HDA3 are related proteins that interact with and are essential for the activity of the yeast histone deacetylase HDA1. Proc Natl Acad Sci U S A. 2001;98:4391-4396.

HAND
14536084 Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI. Mol Cell. 2003;12:449-460.

DUF1086

Domain	Description	Evalue	Bits	GA	Start	End
Opi1	Transcription factor Opi1	0.0014	8	20.10	11	126
DBINO	DNA-binding domain	2.1E-07	21	22.90	81	133
ResIII	Type III restriction enzyme, res subunit	1.9E-11	34	20.90	188	348
SNF2_N	SNF2 family N-terminal domain	0	246	20.10	202	469
DEAD	DEAD/DEAH box helicase	4.4E-08	23	20.60	206	325
AAA_14	AAA domain	0.00026	11	27.00	310	351
HDA2-3	Class II histone deacetylase complex subunits 2 and 3	4.1E-06	16	20.20	482	547
Helicase_C	Helicase conserved C-terminal domain	4.3E-21	65	20.90	492	604
DUF1509	Protein of unknown function (DUF1509)	0.00013	11	20.30	646	753
Opi1	Transcription factor Opi1	0.0061	6	20.10	658	695
HAND	HAND	6.7E-10	30	21.00	754	806
DUF1086	Domain of Unknown Function (DUF1086)	4.6E-05	13	25.00	840	888
Myb_DNA-binding	Myb-like DNA-binding domain	4.4E-06	17	24.40	843	882
SLIDE	SLIDE	0	142	20.80	897	1007
Myb_DNA-binding	Myb-like DNA-binding domain	0.0057	7	24.40	948	971
DBINO	DNA-binding domain	0.48	1	22.90	985	1020