c2pfam

AT1G13040.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 1.5E-05 15 25.00 12 37
PPR_long Pentacotripeptide-repeat region of PRORP 4E-05 13 27.00 12 156
PPR_2 PPR repeat family 0.00015 12 30.00 16 38
DUF3368 Domain of unknown function (DUF3368) 0.00081 9 27.30 18 51
PPR_1 PPR repeat 6.5E-05 13 23.80 21 36
PPR_3 Pentatricopeptide repeat domain 0.51 1 25.00 25 40
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.02 4 25.90 40 144
PPR PPR repeat 0.0042 8 25.00 47 71
PPR_2 PPR repeat family 8.3E-08 23 30.00 47 91
PPR_3 Pentatricopeptide repeat domain 0.0018 9 25.00 69 123
PPR PPR repeat 3.4E-05 14 25.00 80 110
PPR_2 PPR repeat family 3E-05 14 30.00 80 113
PPR_1 PPR repeat 0.0024 8 23.80 80 94
PPR_1 PPR repeat 0.005 7 23.80 109 137
PPR_2 PPR repeat family 5.3E-14 42 30.00 112 160
PPR PPR repeat 0.00057 10 25.00 116 144
PPR_3 Pentatricopeptide repeat domain 6.6E-08 23 25.00 140 182
PPR_1 PPR repeat 2.9E-13 40 23.80 143 175
PPR_2 PPR repeat family 7.2E-15 45 30.00 147 196
PPR PPR repeat 6E-10 29 25.00 150 180
TPR_14 Tetratricopeptide repeat 0.15 3 23.50 155 183
TPR_16 Tetratricopeptide repeat 0.0017 9 32.70 158 203
Toxin_YhaV Toxin with endonuclease activity YhaV 0.054 4 22.80 161 184
PPR_long Pentacotripeptide-repeat region of PRORP 3.6E-08 23 27.00 163 252
PPR PPR repeat 0.12 3 25.00 189 207
PPR_2 PPR repeat family 0.16 2 30.00 189 207
PPR_1 PPR repeat 0.0063 7 23.80 190 207
Amidase_5 Bacteriophage peptidoglycan hydrolase 0.00068 10 20.40 195 251
PLA2_inh Phospholipase A2 inhibitor 0.0089 7 21.70 206 248
PPR_3 Pentatricopeptide repeat domain 1.5E-12 38 25.00 208 266
PPR_1 PPR repeat 2.2E-12 37 23.80 217 246
PPR_2 PPR repeat family 1E-17 54 30.00 219 263
PPR PPR repeat 5.3E-10 29 25.00 221 251
PPR_long Pentacotripeptide-repeat region of PRORP 5.3E-09 26 27.00 238 315
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.46 -1 25.90 247 282
PPR_1 PPR repeat 4.7E-08 23 23.80 250 282
PPR_2 PPR repeat family 1.5E-15 47 30.00 253 302
PPR PPR repeat 2.9E-07 21 25.00 256 286
AEP1 ATPase expression protein 1 0.18 1 27.00 257 301
PPR_3 Pentatricopeptide repeat domain 2.5E-05 15 25.00 277 299
PPR_1 PPR repeat 0.0024 8 23.80 285 303
PPR PPR repeat 0.042 5 25.00 291 311
MRP-S27 Mitochondrial 28S ribosomal protein S27 5.5E-06 16 25.90 304 425
MNE1 Mitochondrial splicing apparatus component 0.0013 9 22.70 311 376
PPR_3 Pentatricopeptide repeat domain 1.6E-11 34 25.00 314 370
PPR_1 PPR repeat 7.5E-13 38 23.80 323 352
PPR_2 PPR repeat family 7.2E-17 52 30.00 324 370
Clathrin Region in Clathrin and VPS 0.00045 10 23.60 324 385
PPR PPR repeat 1.3E-09 28 25.00 326 355
TPR_14 Tetratricopeptide repeat 0.7 1 23.50 330 353
PPR_long Pentacotripeptide-repeat region of PRORP 5.6E-16 49 27.00 336 458
Toxin_YhaV Toxin with endonuclease activity YhaV 0.7 0 22.80 337 356
Coat_F Coat F domain 0.012 6 23.80 342 357
PPR_3 Pentatricopeptide repeat domain 5.1E-15 46 25.00 346 403
PPR_1 PPR repeat 4.5E-10 29 23.80 354 387
AEP1 ATPase expression protein 1 0.091 2 27.00 357 391
PPR_2 PPR repeat family 1.7E-11 34 30.00 359 394
PPR PPR repeat 9.5E-09 25 25.00 361 391
TPR_14 Tetratricopeptide repeat 0.24 3 23.50 365 393
DUF3368 Domain of unknown function (DUF3368) 0.68 0 27.30 378 390
PPR_1 PPR repeat 1.4E-12 37 23.80 390 421
PPR_2 PPR repeat family 1.2E-17 54 30.00 393 442
MNE1 Mitochondrial splicing apparatus component 0.69 0 22.70 395 423
PPR PPR repeat 1.1E-08 25 25.00 398 424
AEP1 ATPase expression protein 1 0.057 3 27.00 399 430
Toxin_YhaV Toxin with endonuclease activity YhaV 0.019 5 22.80 406 431
TPR_14 Tetratricopeptide repeat 0.36 2 23.50 407 425
PLA2_inh Phospholipase A2 inhibitor 0.28 2 21.70 410 464
PPR_3 Pentatricopeptide repeat domain 3.2E-10 30 25.00 417 473
PPR_1 PPR repeat 8.9E-17 51 23.80 426 457
PPR_2 PPR repeat family 2E-18 57 30.00 428 476
PPR PPR repeat 4.9E-13 39 25.00 431 461
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.054 2 25.90 435 494
TPR_14 Tetratricopeptide repeat 0.13 4 23.50 437 455
TPR_16 Tetratricopeptide repeat 0.82 1 32.70 443 455
PPR_long Pentacotripeptide-repeat region of PRORP 0.044 3 27.00 448 511
PPR_1 PPR repeat 3.6E-06 17 23.80 459 491
PPR PPR repeat 0.00024 12 25.00 467 496
PPR_2 PPR repeat family 4.2E-06 17 30.00 471 512
Coat_F Coat F domain 0.14 3 23.80 481 496

517

PPR
PPR_long
PPR_2
DUF3368
PPR_1
PPR_3
MRP-S27
PPR
PPR_2
PPR_3
PPR
PPR_2
PPR_1
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_14
TPR_16
Toxin_YhaV
PPR_long
PPR
PPR_2
PPR_1
Amidase_5
PLA2_inh
PPR_3
PPR_1
PPR_2
PPR
PPR_long
MRP-S27
PPR_1
PPR_2
PPR
AEP1
PPR_3
PPR_1
PPR
MRP-S27
MNE1
PPR_3
PPR_1
PPR_2
Clathrin
PPR
TPR_14
PPR_long
Toxin_YhaV
Coat_F
PPR_3
PPR_1
AEP1
PPR_2
PPR
TPR_14
DUF3368
PPR_1
PPR_2
MNE1
PPR
AEP1
Toxin_YhaV
TPR_14
PLA2_inh
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
TPR_14
TPR_16
PPR_long
PPR_1
PPR
PPR_2
Coat_F

References:

AEP1

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

PLA2_inh
8195214 A phospholipase A2 inhibitor from the plasma of the South American rattlesnake (Crotalus durissus terrificus). Protein structure, genomic structure, and mechanism of action. J Biol Chem 1994;269:15646-15651.

TPR_16

Toxin_YhaV
17706670 prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli. J Mol Biol. 2007;372:894-905.

Coat_F

Amidase_5
6146601 Biochemical characterization of a murein hydrolase induced by bacteriophage Dp-1 in Streptococcus pneumoniae: comparative study between bacteriophage-associated lysin and the host amidase. J Bacteriol 1984;159:793-796.
9379901 The lytic enzyme of the pneumococcal phage Dp-1: a chimeric lysin of intergeneric origin. Mol Microbiol 1997;25:717-725.
3422470 Molecular evolution of lytic enzymes of Streptococcus pneumoniae and its bacteriophages. Proc Natl Acad Sci U S A 1988;85:914-918.

MNE1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

DUF3368

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	1.5E-05	15	25.00	12	37
PPR_long	Pentacotripeptide-repeat region of PRORP	4E-05	13	27.00	12	156
PPR_2	PPR repeat family	0.00015	12	30.00	16	38
DUF3368	Domain of unknown function (DUF3368)	0.00081	9	27.30	18	51
PPR_1	PPR repeat	6.5E-05	13	23.80	21	36
PPR_3	Pentatricopeptide repeat domain	0.51	1	25.00	25	40
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.02	4	25.90	40	144
PPR	PPR repeat	0.0042	8	25.00	47	71
PPR_2	PPR repeat family	8.3E-08	23	30.00	47	91
PPR_3	Pentatricopeptide repeat domain	0.0018	9	25.00	69	123
PPR	PPR repeat	3.4E-05	14	25.00	80	110
PPR_2	PPR repeat family	3E-05	14	30.00	80	113
PPR_1	PPR repeat	0.0024	8	23.80	80	94
PPR_1	PPR repeat	0.005	7	23.80	109	137
PPR_2	PPR repeat family	5.3E-14	42	30.00	112	160
PPR	PPR repeat	0.00057	10	25.00	116	144
PPR_3	Pentatricopeptide repeat domain	6.6E-08	23	25.00	140	182
PPR_1	PPR repeat	2.9E-13	40	23.80	143	175
PPR_2	PPR repeat family	7.2E-15	45	30.00	147	196
PPR	PPR repeat	6E-10	29	25.00	150	180
TPR_14	Tetratricopeptide repeat	0.15	3	23.50	155	183
TPR_16	Tetratricopeptide repeat	0.0017	9	32.70	158	203
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.054	4	22.80	161	184
PPR_long	Pentacotripeptide-repeat region of PRORP	3.6E-08	23	27.00	163	252
PPR	PPR repeat	0.12	3	25.00	189	207
PPR_2	PPR repeat family	0.16	2	30.00	189	207
PPR_1	PPR repeat	0.0063	7	23.80	190	207
Amidase_5	Bacteriophage peptidoglycan hydrolase	0.00068	10	20.40	195	251
PLA2_inh	Phospholipase A2 inhibitor	0.0089	7	21.70	206	248
PPR_3	Pentatricopeptide repeat domain	1.5E-12	38	25.00	208	266
PPR_1	PPR repeat	2.2E-12	37	23.80	217	246
PPR_2	PPR repeat family	1E-17	54	30.00	219	263
PPR	PPR repeat	5.3E-10	29	25.00	221	251
PPR_long	Pentacotripeptide-repeat region of PRORP	5.3E-09	26	27.00	238	315
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.46	-1	25.90	247	282
PPR_1	PPR repeat	4.7E-08	23	23.80	250	282
PPR_2	PPR repeat family	1.5E-15	47	30.00	253	302
PPR	PPR repeat	2.9E-07	21	25.00	256	286
AEP1	ATPase expression protein 1	0.18	1	27.00	257	301
PPR_3	Pentatricopeptide repeat domain	2.5E-05	15	25.00	277	299
PPR_1	PPR repeat	0.0024	8	23.80	285	303
PPR	PPR repeat	0.042	5	25.00	291	311
MRP-S27	Mitochondrial 28S ribosomal protein S27	5.5E-06	16	25.90	304	425
MNE1	Mitochondrial splicing apparatus component	0.0013	9	22.70	311	376
PPR_3	Pentatricopeptide repeat domain	1.6E-11	34	25.00	314	370
PPR_1	PPR repeat	7.5E-13	38	23.80	323	352
PPR_2	PPR repeat family	7.2E-17	52	30.00	324	370
Clathrin	Region in Clathrin and VPS	0.00045	10	23.60	324	385
PPR	PPR repeat	1.3E-09	28	25.00	326	355
TPR_14	Tetratricopeptide repeat	0.7	1	23.50	330	353
PPR_long	Pentacotripeptide-repeat region of PRORP	5.6E-16	49	27.00	336	458
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.7	0	22.80	337	356
Coat_F	Coat F domain	0.012	6	23.80	342	357
PPR_3	Pentatricopeptide repeat domain	5.1E-15	46	25.00	346	403
PPR_1	PPR repeat	4.5E-10	29	23.80	354	387
AEP1	ATPase expression protein 1	0.091	2	27.00	357	391
PPR_2	PPR repeat family	1.7E-11	34	30.00	359	394
PPR	PPR repeat	9.5E-09	25	25.00	361	391
TPR_14	Tetratricopeptide repeat	0.24	3	23.50	365	393
DUF3368	Domain of unknown function (DUF3368)	0.68	0	27.30	378	390
PPR_1	PPR repeat	1.4E-12	37	23.80	390	421
PPR_2	PPR repeat family	1.2E-17	54	30.00	393	442
MNE1	Mitochondrial splicing apparatus component	0.69	0	22.70	395	423
PPR	PPR repeat	1.1E-08	25	25.00	398	424
AEP1	ATPase expression protein 1	0.057	3	27.00	399	430
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.019	5	22.80	406	431
TPR_14	Tetratricopeptide repeat	0.36	2	23.50	407	425
PLA2_inh	Phospholipase A2 inhibitor	0.28	2	21.70	410	464
PPR_3	Pentatricopeptide repeat domain	3.2E-10	30	25.00	417	473
PPR_1	PPR repeat	8.9E-17	51	23.80	426	457
PPR_2	PPR repeat family	2E-18	57	30.00	428	476
PPR	PPR repeat	4.9E-13	39	25.00	431	461
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.054	2	25.90	435	494
TPR_14	Tetratricopeptide repeat	0.13	4	23.50	437	455
TPR_16	Tetratricopeptide repeat	0.82	1	32.70	443	455
PPR_long	Pentacotripeptide-repeat region of PRORP	0.044	3	27.00	448	511
PPR_1	PPR repeat	3.6E-06	17	23.80	459	491
PPR	PPR repeat	0.00024	12	25.00	467	496
PPR_2	PPR repeat family	4.2E-06	17	30.00	471	512
Coat_F	Coat F domain	0.14	3	23.80	481	496